J.CropRes.56:67-71
!tr!
Research
Article
(2011)
Flowering
traits
andtheir
genetic
basis
in
the
ancestraltetraploid
wheat yarieties `Emmer' and `Pyramidale'
[fetsuyaNakazak{i),RyiijiMoriyamaiL HisashiKagatai),HiroyoshiINlakaharaV,Mika NaitoD,
KeisukeKatsurai),HirokiSaitoi),KeajiKato2LHidetakaNishida2),1laihachiKawahara3),
D
D
TakashiFudano
andAkiraKitajima
i)
Graduate
SchoolofAgriculture,kyoto
Uinivensity(Experimental
Farm,
12-1
Hatchonawate,
Talcatsuki,
Osaka
569
-
O096,
Japan)
2)
GraduateSehoog
ofIVI]tural
Sbienceand 7bchnolo{plOkcDJamaU)iiversity(I-1-1
fsushima-naka,Kita-ku,Okayama 700-
8530,
Japan)s)
GraduateSbhoolqfAgricultune,1<)?otoUhiversity
(Plarit
Germ-plasmInstitute,Mozume, Muko, Kyoto617-
OOOI,Japan)tsi r
Summary: Thefloweringtraitsof Emmer and PyramidaEe, two ancesma1 wheat varieties tltatare new used
temake two
types
of beerbrewedinpartnershipwith Kyoto Uniyersityscientists, were investigatedindetail. These varieties are classified as T turgidum L.ssp. dicocconand ssp. turanicum, respectively, and little inforrnatienisavailable about theiragronomic characteristics, Through evaluatjon of the internalfactors
determining
theirfloweringtime(photoperiodic
response, vernalization requirement and naiTow-sense earliness), we revealed thatthetwo varieties are spring-habit and photoperiod-sensitive.Whilethenarrow-sense earliness of'Emmer'
islessintensethanthatof `PyramidaleZ thephotoperiodicresponse of
`Emmer'
ismore intensethan thatof`Pyramidale'.
Based on ageneticanalysis using theF2populatienofthe twovarieties, we concluded that`Pyramidale'
harborsa
photoperiod-insensitive
alleleintheIlpcl-Allocus,thesame allelereportedby
Wilhelm et al.(2009),
Thisphotoperiod-insensitivealteleisexpected tobeausefu1 geneticresource inthebreedingoftetraploidand hexaploidwheat.
Key words: floweringtrait,tetrapleidwheat, photoperiodinsensitivity)
Rpcl-A1
tntroduction
KyotoUniversitMINhsedaUniversityand KizakuraCo.Ltd. have
jointly
developedthree brandsof beer:"White
Nile"(a
regularbeer)
in2006,"BlueNile"
(a
low-maLt
beer)
in
2007,
and "RubyNiie"
(a
regularbeer)
in
2oo8
(Fig.
1)
(http:11www.
kyoto-u.ac.jpfenlnewsLdatalh!hllnews7t2009/09e420-1.htm).
" -J.
While BlueNile is made with modern durum wheat strains
(T}'iticum
turgidum L.ssp,durum),
theothertwoaremade withancestral tetraploid strains: "White Nile"with emmer wheat
CEmmer'>
and "Ruby Nite"with pyramidaiewheat(`Pyramidaie'),
which are classified as T turgidum L.ssp. dicocconand ssp.turanicum, respectively, The two ancestral varieties were
cellected fromtheiroriginal areas of
distribution,
namelM thesouthern Medlterraneanbasin,and havesince beenpreservedat
theLaboratoryofCrop Evolution,P]antGerm-plasm Institute, GraduateScheol of Agriculture,Kyoto University.We have produced
foundation
seeds for`Ernmer' and `Pyramidale' atthe
ExperimentalFarm of Kyoto Universitysince2005
and2008,
respectively, in order to distributethe seeds forconsignment cuttivation. Both varieties haye traitsthatmake them unsuitable forcu]tivation according tetraditionalmethods inthesoutheast area of Japan,such as a Jongculm, a lackof
tolerance against disease and excessive moisture, and atendency
to sprout
before
harvest.
Because solittle
informationis¢
.・・
ttt
t
tt..
.
.
t.・t.・..
ttt
'
' es/.ttt
tt
x.}.・tt/
tt.//t./tt/.//lt...
ts.t..t.ff,l,
tt/
tt
tt
Acccepted :April 25,2011Correspondingauthor :
'retsuyaNakazaki([email protected])
Fig.1Threebrandsof beerdevelopedbyKyotoUniversity,
Waseda Univefsityand KizakuraCo.Ltd.
"White Nile"(right),
"Blue
Nile"{left}and"Ruby
Nile" {center}.The Society of Crop Science and Breeding in Kinki, Japan
NII-Electronic Library Service
TheSociety of Crop Science and Breeding in Kinki, Japan
J.CropRes.
56(2011)
available about the bestcultivation methods
for
these twovarieties, such as
fertilization
with manure, or about theirbest cropping seasons, ithasbeennecessary todeterminetheoptimal proceduresthrough trialand error.Among themany variables thatcan
be
adjustedin
such trials, cropping season, that is,thelengthof time from seeding toharyest,isparticularlyimportantforyieldand grainquaiity.Tb determinean appropriate lengthforthe cropping season, itis
essentialte clarify the
flowering
traitsof each variety. Thefiewerlngtraitsof wheat depend on three internal factors, photoperiodieresponse, vernalization requirement and narTow-sense earliness
(Yasuda
and Shimoyama 1965,Hoogendoorn 1985,Kato and Ylamagata1988).According te Kato andYamagata
(1988),
photoperiodlcresponse refers to the retardation or acceleration of headinginresponse to changes in daylength.Thiscan beevaluated byrneasuring thediffbrenceinthe number of daysfromthefu11yvernalized stage to heading
time between plantsraised under short-day and long-day conditions. The
phetoperiodic
response inwheat isdetermined
bythreehomoeologous genes,llpcl=Ai,llpd-BJand llpd-Dl, which are orthelogeus to thepseudoresponseregulatoT gene
(Beales
et al.2007).
Inhexaploidwheat, thegenesconferring photoperiodinsensitivity
have
been
identifiedon chromosomes2B
and2D
<WOrland
and Law1986,
Mohleret al.2004,
Bealeset al.2007).In tetraploidwheat, two allelesofthe llptMl lecus which cause aphotoperiod-insensitivephenetypehaverecently beenidentified
(Wilhelm
etat. 2009).Vernalizationrequirement isevaluated by measuring theminimum durattonof chi11ing treatmentthat isnecessary forfu11vernalization(Kato
andYainagata
1988).
So fhr;threekinclsof genes(homoeologous
genes)thatdeterminethe vernallzation response inwheat have beenisotated,YRIVI(Yan
et al.2003),
VRAI2(Yiin
et ar.2004)
and VR?V3
(Yan
et al. 2006).Narrow-senseearliness isdefined as the earliness offu11y
vernalized plantsunder optimum conditionsfor
reproductlve grewth(lhkahashi
and Yasuda 1958).Itcan be evaluated by rneasuring thenumber of days fromthefu11yverna]ized stage to headingtime under optimum conditions forreproductive growth,includingof 24hdaylighi(Kato
and Yimagata 19zz).Several
QTLs
controllingnarrow-sense earliness havebeenidentified
(Cockrarn
etal.20e7).
Inthisstudy, thethreeintemalfactorscontrotting fiowering
.
.i
1i
tttraitswere evaluated in Emmer and Pyramidaleusing the
rnethod deve]opedby Kato and Yamagata
(1988).
Sincethisevaluation uncovered a iargediffereneebetween the two
varieties inphotoperiodieresponse, a segregation analysis for
thetraitwas also performedinthisstudM using an F2population
between`Emmer'
and `PyramidaEeZ Here,we report the flowering
traitsand the genetic
basis
of the photoperiodicresponseeharacteristics ofthese twoancestralvarieties.
Materials
andMethods
Plantmaterials
sti
,
Emmer, Pyramidale and the
hexaploid
wheat(T
aestivum L.)variety `Norin61'
were subjected to analysis of the threefactorscontrolling floweringtraits.A totalof 148 F2 plants
xt
i
!
between
Emmer
andPyramidale
were used toanalyze the phenotypicfiowering
response.Evaluation
otflewering
traits
Seedsof thethreevarieties were geTrninatedon a wet filter paper at 20℃ for two days.To evaluate vernalization requirement and narrow-sense earliness, each
germinating
seedwas putinto a 2-crn-squarecell trayfi11ed with soil and subjected to chilling treatmentat
4
℃for
various durations(O,
7,
14,
21
or28
days)under24-h
daylightconditiens. fen plantswere thustreatedforeach duratlon.Afterthe chilling treatment,the cell
trayswere maintained at20℃ uncier 24-hdayliglttconditions,
We rneasured the nurnber of daysfromtheend of thechilting
treatment totheunfoldlng ofthefirstleagand thenurnber of
daysfromtheend of thechilling treatment totheunfolding of
the aag leafineach group,From these datawe calculated the
Deg thatis,theadjusted number of daysftomtheplantingof a
seed
in
its
cel]traytotheunfolding oflts
flagleaC
according tothemethed of Kato and Yamagata
(1988).
The strength of the effect of the durationof the chiiling treatment on the Dof indicatesthedegreeof a genotype'svernalization requirement, while the Dof itselfindicatesthedegreeof that genotype'snarrow-sense earliness
(Kato
and Yamagata1988).Ib cstimate photoperiodic response,
30
seedtings of eachvariety were preparedas describedabove. After
42
daysofthechil}ing treamient
(suMcient
forfu11vernalization),15
seedlmgs of each variety were grown at20
℃ under12-h
daylightconditions
(SD)
while theother 15were grown at 20℃ under24-h
daylighr
cenditions(LD).
The
number efdays
untilheading,
excludingthe
time spentin
thechilling treatment,was recorded foreach plantas the Doh. The differenceinDoh betweenthe SD and LD seedlings isreferred tothedegreeof photeperiedicresponse inthisstudy.For our segregation analysis ofphotoperiodic response inthe
F2population,
148
Fzseedlings and tenparentalseedlings were preparedas describedabove. After37
days of the chil]ingtreament, the seedlings were grown under SD conditions at
20
℃,and thenumber ofdays untilheadingwas recorded, Assayfor
lpct-A
fallelesThe DNA of
'Emmei,
`Pyramidale', `Norin 61'and eachplant
intheF2population
was extractedfromleavesefseedlings grownforabout two weeks aftertheend ofthe chilling treatmentaccording to themethod of Zheng et aL
(1995).
Tbdetecttheallele at the flpcltr41locusineach plant,PCR analysis was performedusing three primersdevelopedby Wilhelinet al.
68
Floweringtraitsand theirgeneticbasisintheancestral tetraploidwheatvarieties
4
ftEmmer
and PyramidaIet
(2009):
durum-Ag5del-Fl,durum-Ag5del-F2
and'
Ag5delRl. PCR was conducted using BIOI:AQ DNA Polymerase
(Bioline
LabsLtd.,London,UK) with thefo11owing PCR profile:95
℃for
5
min,foI{owed
by35
cycres eachconsistingof96 ℃ for
30
s,55
℃ for1
min and72
℃for
2min,with a finalextension
72
℃ for5
min. Sequencingof thePCRir- s
productsfrom Emmer and Pyramida]ewas ordered frem and perfbrmedbyFASMAC Co.,Ltd.,Japan.
Results
andDiscus$ion
Flowering
traitsof `Emmer' and `Pyramidale'The changes of Dof values inaccordance with thelengthof
the chilling treatment,observed forthreevarieties, are shown in Fig,2. In
`Emmer'
and`Pyramidalel
forexample, the Defresulting
from
sevendays
ofchillingtreatmentwas significarrtlydifferent
fromthatresulting from14,
21
or28
daystreatment(P<O.05;
t-test).Theminimum durationofchi]]ing necessar}J toinducevernalization was 14 days inbothvarieties, and the
differencesinDof between plantssubjected to no chiiLing
treatment and thesesubjected tofuLlyvernalizing treatment were
only 1.7daysfor`Emmer' and 1.6for`Pyramidale'. Therefore we concluded
that
both
ofthese
are strongly spring-habit varieties. `Norin61',
onthe
otherhand,
did
not show aconstantDof
yaluein
thisexperiment, This result indicatesthat
theminimum durationof chilling forthisvariety ismoie than28 days;this iscQnsistent with the
30-day
minimum duration repertecl inapreviousstudy(Kato
and Yamagata 1988).Theaverage Dofvalues of fulLyvernalized plantsgrownunder
24-h
daylight
conditions correspond tonarrow-sense earliness. Inthis
study,the
narrow-sense earliness va]ues of `Emmer' and`Pyrarnidale'
were estimated at
26.5
and30.3,
respectively; thedifferencebetweenthem was significant
(t=8,69,
p<O.OOI).This4 t result suggests thatthenarrow-sense earliness of Pyramidale
islessstrong thanthatof `Emmer',
Doh values under theSD and LD conditions were significantly
different
inatlthethreevarieties: thediffl]rencesin`Emmer',
37 35 33go-31o 29 27 25 Flg.2 O 7 t4 21 2BDurationof eh"Hng treatment (days) Changes inDof according toduration ofchHlhg
treatment observed forthreewheat varieties.
soo Fig,3 80i
d
l
cC 6oI
4olb
. ba I i i20I.
I I i'
O Iww.
...
.umww
.-
-.-...
....
ma.
Pylamidare Emmer Norln61 Doh values of thethreevarieties under SD tolack)anct LD
(white)
eonditions.Dch values were compared using Tukey's tesL
Lettersoverthebars indicatesignificantdMerence
each other atthe5% level.
`Pyramidale'
and 'Norin
61'
were40,1,
20,O
and6,8,
respec-tiyely
(Fig.
3).
AlthoughDoh,unlike Dog iscalculatedwithoutan adjustment procedure,thedifferenceinDoh
between
theSD and LD groups ismainly causedby
the intensityof theirphotoperiodic
response. Therefore, the strengths of theirlt
photoperiodie responses can be ranked as fo11ows:Emmer >
`Pyramidale'
> 'Norin
61'.
Thisfurther suggests that XEmmer'-
tand Pyramidaleare photoperiod-sensitivevarieties and elearly shows thatthe degreeof photoperiodsensitivity isgreaterin
iJ
.;
JEmmer thanm Pyramidale
,
Thephotoperiod-insensitivity oftNorin
61'
cou}d becaused bya mutation intheIlpdiDllecuson chromosome
2D
(Tanio
et aL2005);
thegeneticbasesof thephotoperiodicresponses in
`Emmer'
and`Pyramidale'
remain unclear, howeyer.Alleles
of thelPdLA
Ilocus of `Emmer'and `Pyramidale'
Intetraploidwheat varieties, twe alleles ofllpd-Al thaicenfer
phetoperiodinsensitivjtyhave beenreported; thesehave
1,027-bp
or1,117-bp
deletions,respectively, upstream of the codingregion
(Wilhelm
et al.2009),
To clarify thegenotypesof`Emmer'
and
'Pyramidale'
atllpc-A1,
aPCR
assaywas conductedaccording to
the
methodby
Wilhelm
et al.(2oo9),
Twotypes
ofPCR product were obtained foreach of thethreevarieties
(Fig.
4).
WhilethePCR productfrom `Pyramidale'islikelytobethe
same as thatfromthe1,117-bpdeletion-typealleLe, thesize of which is
290
bp,the PCR productsfrom 'Emmer'and `Norin
61'
arelikelytobe
thesame as thatfrom
theno-deletien-typeaLlele,
the
size ofwhichis
452
bp.Sequencinganalysis ef thePCR productsfrom `Emmer' and
i
t
Pyramidalerevealed thatthesequences of theirPCR products
are identiealto thoseof the ne-deletion-type allete
(acc.
EUI17148) and the1,117-bp
deletion-typeallele(ace.
EUI17149), respectively. Therefore we concluded that`Pyramidale'
hasa phetoperiod-insensitiveaElele at theJlpd-Ai
Lt
The Society of Crop Science and Breeding in Kinki, Japan
NII-Electronic Library Service
TheSociety ofCrop Science and Breeding in Kinki, Japan
J.CropRes.56(2011)
soe
bp
rleebp
Pyramidale ErnrneF NeTln6a
M
Fig.4 PCR assay tordetecting a[leles atthe PPdLA1
Iocusof`Pyramidale'. `Emmer:
and "Norin 61
1
Arrows indlcatethetargetPCR products. M:1OO-bpDNA laddermarkei,
thesequenees of theremaining regions still need tobeanalyzed in
a
future
study.Genetic
analysis oftlowering
varlationin
theF2
population
We co/nducted ageneticanalysis of Deh using theF2population between
`Emmer'
and `Pyramidale'. Atotalof148 F2plantswere clearly dividedintoearly- and ]ate-fioweringtypes
(Fig.
5).The segregation of earty-type(111
plants)and late-type(37
plants) showed a good fitto3:1
ratio(x2
==O.32,
P==O.57),
suggestingthata single locusisresponsible forDof variation. InthePCR assay
for
genotypes at Ili]clzdlinthe
F2 population,thesegregation ofplants havinghomozygous
deletion-type
alleles(34
plants),heterozygousalleles
(77
plants),
and homozygous no-deretion-type alleles(37
plants)fitthe1:2:I
ratioexpected for one-locus segregation(
xZ=:O.36,
P=:O,83).
The PCR assay alsoshowed that the presence of the deletion-typeallele was
completely correlatedwith early flowering
(Fig.
5).Thus,itcanbeconcluded
that
theIowlevel
of photoperiod sensitivityin
ut-cNa-eLooE=z5o302e10 D
d
e
n
:/l
70 Fig. se 6o 7o so Deh5 Frequencydistributionot Doh in
the
F2 plantsand theparents
FEmmer'
and`Pyramidale'.
Parent plants are shown on the upper row;
`Pyramidate'
are shown inbtack andtErnmer'
lnnthite.In theF2popalation,plantshomozygoustor
the deletion-typeallele are sbown inbLackand
plantshomozygous forthene-deietion-type allele are
shown invvhite on thelowerrow, Heterozygotes are
shown ingey inthisrow.
': the
category intowhich more than 86 of Doh
values feli.
*
`Pyramidale'
ismainly due tothe effectofthe deletion-type
alleleofllpd-Al.
The F2 plantshomozygeus for the deletion-typeallele underwent headingearlier thanthe
`Pyramidale'
plantsdid,andthe F2 plantshomozygous for the no-deletion-type a)lele
it
underwent heading later than the Eminer plants did.This
discrepancybetweentheFzp]antsand theparentsmay bepartly
dueto theirmixed geneticbackgroundcensjsting of
tEmmer'
and
`Pyramidale'
genes,but
itwas most likelycausedby
anunfavorable condition inthegrowth chamber
that
affected thegrowh of
the
F2plants.Nevertheless,theeffect ofthedeletion-type
allele on earLiness, includingthe mode of incomplete dominance(Fig.
5),iscompatible with theresults reported by Wilhelm et al.(2009).
Thissuggests that `Pyramidale'has a
photoperiod-insensitive allele at theIlr)d-Allocus,which might
be
the
1,117-bp
deletion
typeallele.
Conc[usion
Inthisstudy, the fioweringtraitsof the ancestral yarieties
4t i t
Emmer and Pyramidalewere reyealed and basicinformation
on a suitable cultivation periodwas obtained. Both varieties are
spring-habit wheat strains. The narrow-sense earliness of
`Pyramidale'
isgreaterbyaboct fivedaysthan thatof
`Emmer'
,
whose narrow-sense earliness issimilar to thatof `Norin61'.
Although both of the ancestral varieties show photoperiod
sensitivity,tPyvarnidale'hasamore intensereaction than `Emmer' dose.This diillerenceiscaused by the effects of the I,117-bp
.t
)deletion-typeallele in Pyramidaleand the no-deletien-type allele in
`Emmer'
attheIlpd=tl1locus,Inthisstudy vve identifiedti
r
t
a photoperiodinsensitivityallele m Pyramidale thatwilE be usefu1 as a genetic resource
in
thebreeding
of earlyrnaturing varieties of tetraploidand hexaploidwheat.
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四
倍 体
コム
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エン
マー
お よ
び
ピ ラ
ミ
ダ
ー
レ の
開 花 特 性 と そ
の
遺
伝 的
制 御
機 構
中崎 鉄 也D・
森 山 竜二 L)・
加 賀田 恒D・
若原浩義
1)・
内藤 実 加1}・
桂 圭 佑1}・
齊藤 大 樹 D・
加 藤 鎌 司2〕・
西田英 隆2)・
河 原太八3)・
札埜 高志 1)・
北 島 宣1〕 1) 京都 大学大 学 院 農 学 研 究科 (〒569一
0096
高 槻 市八町 畷 町12 − L
附属農場) 2〕 岡山大 学 大 学 院 自然 科 学 研 究 科 (〒700− 8530
岡 山市 北 区 津島中3−1−1
) 3〕 京都大学 大 学 院 農 学 研 究 科 (〒617 − 0001
向日市物集女町中条 1,
植物生殖 質 研 究 施 設 ) 要 旨:京都大学の ブ ラン ドビー
ルの原料であ る占代コ ムギ 品種 エ ンマー
および ピラ ミ ダー
レ の開花特 性 につ い て詳細 な解析を行っ た,
これ らの品種は そ れ ぞ れ Tturgidum L,
ssp.
dicocconお よ びssp.
turanicum に分類 さ れ,
これ までに その栽培に必要な農 業特性に 関 す る 情 報 は ほ とんど得られ てい ない