修
士学 位 論 文
題 名
Theroleoflipoylation‑relatedgenesinenergy
metabolisminDrosOρh〃7a
シ ョ ウ ジ ョ ウ バ エ の エ ネ ル ギ ー 代 謝 に お』け る リ ポ イ ル 化 関 連 遺 伝 子 の 役 割(英 文)
指導教授 相垣 敏郎 教授
平 成26年1月10日 提 出
首都大学東京 大学 院
理工学研究科 生命科学専攻
学修番号12881328
氏 名 段 晶華
Theroleoflipoylation‑relatedgenesinenergymetabolisminDrosoρhila
シ ョ ウ ジ ョ ウ バ エ の エ ネ ル ギ ー 代 謝 に お け る リ ポ イ ル 化 関 連 遺 伝
子 の 役 割(英 文)
細 胞 遺 伝 学 研 究 室 段 晶 華
ABSTRACT
Lipoicacid(LA),alsocalledthiocticacidworksasananti‑oxidantlikevitaminC,
vitaminEandcoenzymeQIotoprotectourbodyfromtheharmoffreeradicals.
Unlikewatersolublevitamins,LAcanworkinfattytissuesbecauseitissolublein
bothwaterandfat.LAisacofactorofseveralenzymesincludingpyru.vate
dehydrogenase(PDH)and2‑oxoglutaratedehydrogenase(OGDH),whichare
involvedinthemaJ'orenergyproducingpathways,glycolysisandTCAcycle.The
pathwayoflipoylationofPDHandOGDHhasbeenwellcharacterizedinE.coli.It
hasbeenshownthatthelipoylationprocessinvolvesthreegenes;lipoicacid
synthetase(lipA),lipoate‑proteinligase(lpIA),andlipoyltransferase(lip.B).
Eukaryotesgenomescontainorthologsoftheseenzymes,buttheirfUnctionsinLA
synthesisandincorporationintoproteinsremainedelusive.
Inthisthesis,tounderstandthegeneticbasesoflipoylationineukaryotes,Iused
DrosophilaasamodelorganismandinvestigatedtherolesofLas,L,plA,LiT2,the
orthologsofbacteriallipA,LρIA,andlipB,respectively.IusedtheGAL4‑UASsystem
tooverexpressorRNA‑mediatedgeneknockdowninDrosoρhila,andanalyzedtheir
phenotypesincludingviability,lifespan,metabolomes.Ialsoanalyzedthree
2
transposoninsertionlinesinwhich‑P‑elementsareinsertednearbyeachofthethree
loci.
IfoundthatubiquitousknockdownorthetransposoninsertioninLas,LiT2showed
defectinlipoylationofPDHandOGDHandtheirviabilitywasseverelyimpaired.
TheseresultsindicatedthatLas,‑L,plAandLipT2areessentialfbrviabilityandare
requiredfbrthelipoylationpathwayofPDHandOGDHinDrosoρhila.Thus,the
lipoylationpathwayislikelytobedifferentfromthatinE.coli.
3
要 旨
水 溶 性 で 脂 溶 性 で も あ る リボ 酸 は チ オ ク ト酸 と 呼 ば れ て い て 体 内 抗 酸 化 剤 機 能 を 有 す る 。 ビ タ ミ ンC、 ビ タ ミ ンEと コ エ ン ザ イ ムQ10と と も に 抗 酸 化 ネ ッ トワ ー ク を 形 成 し て フ リー ラ ジ カ ル 危 害 を 防 御 す る。 こ れ ま で の 研 究 か ら、 エ ネ ル ギ ー 代 謝 に か か わ る 酵 素 の 障 害 は 発 達 障 害 や 精 神 疾 患 の 発 症 と密 接 に 関 連 し て い る こ と が 示 唆 さ れ て い る 。 最 近 、 タ ン パ ク質 の 翻 訳 後 修 飾 の ひ とつ で あ る リボ 酸 修 飾 に 関 わ る 遺 伝 子 の 異 常 と発 達 障 害 の 関 連 を 示 唆 す る 研 究 成 果 が 報 告 され た 。解 糖 系 の 酵 素 で あ る ピ ル ビ ン 酸 脱 水 素 酵 素 や ク エ ン 酸 回 路 の 酵 素 で あ る2一 オ ク ソ グ ル タ ル 酸 脱 水 素 酵 素 が リ ポ イ ル 化 修 飾 を うけ る 。大 腸 菌 で は こ れ ら の 酵 素 の リポ イ ル 化 に つ い て は よ く研 究 され 、 リ ポ イ ル 化 に 関 わ る3つ の 遺 伝 子 が 同 定 され て い る。 しか し、真 核 生 物 に お い て リ ボ 酸 修 飾 に 関 わ る 遺 伝 子 の 詳 細 な 研 究 は 行 わ れ て い な い 。
シ ョ ウ ジ ョ ウバ エ と ヒ トは7割 近 く の 遺 伝 子 が 共 通 し て お り、 中 で も代 謝 、 神 経 機 能 、個 体 の 成 長 や 寿 命 な ど、 生 物 の 基 本 的 な 機 能 に 関 わ る遺 伝 子 は 保 存 性 が 高 い こ と
が わ か っ て い る 。 本 研 究 で は 、 シ ョ ウ ジ ョ ウバ エ を用 い て 大 腸 菌 で 同 定 され て い る リ ボ 酸 修 飾 に 関 わ る 酵 素 の 遺 伝 子 の シ ョ ウ ジ ョ ウバ エ ホ モ ロ ジ ー に 注 目 し 、そ れ らの リ ポ イ ル 化 に お け る 機 能 、お よ び 生 体 内 の機 能 を 明 らか に す る こ と を 目的 と した 。 具 体 的 に は リポ イ ル トラ ン ス フ ェ ラ ー ぜ(liρB、 シ ョ ウ ジ ョ ウ バ エ で はLiioT2)、 リボ 酸 シ
ン セ タ ー ゼ(1i .,oA、シ ョ ウ ジ ョ ウバ エ で はLas)、 リボ 酸 塩 タ ン パ ク 質 リガ ー ゼ(lplA、
シ ョ ウ ジ ョ ウバ エ で はLplA)の3つ の 遺 伝 子 に つ い て 機 能 破 壊 、機 能 抑 制 変 異 や 過 剰 発 現 トラ ン ス ジ ェ ニ ッ ク 個 体 を 作 製 し そ れ を 解 析 し た 。
Lasの 過 剰 発 現 とLi .,oT2変 異 体及 び ノ ッ クダ ウ ンシ ョウジ ョウバ エ は ピル ビ ン酸脱 水 素 酵 素 と2一 オ ク ソ グ ル タ ル 酸 脱 水 素 酵 素 の リポ イ ル 化 が 減 少 し 、酵 素 の 活 性 が 低 下 し た 。 メ タ ボ ロ ー ム 解 析 の 結 果 、解 糖 系 の ピル ビ ン酸 、 ク エ ン 酸 回 路 の2一 オ ク ソ
グ ル タ ル 酸 が 蓄 積 され て い る こ と が 分 か っ た 。ATPの 生 合 成 量 、NADH+/NAD比 が 低 下 し た こ と か ら 、エ ネ ル ギ ー 代 謝 系 に 影 響 を 及 ぼ して い る こ とが 示 唆 され た 。加 齢 に 伴 う体 重 の 減 少 と ト リグ リセ リ ド減 少 が 加 速 され た こ と か ら 、脂 質 異 化 に よ る エ ネ ル ギ ー 産 生 で 補 わ れ て も の と推 測 され る 。ま た 、LasとLplAの ノ ッ ク ダ ウ ン シ ョ ウ ジ ョ ウバ エ は リー サ ル に な っ て し ま い 、LipT2ノ ッ ク ダ ウ ン と三 つ の リポ イ ル 化 関 連 遺 伝 子 の 過 剰 発 現 シ ョ ウ ジ ョ ウ バ エ も 寿 命 が 短 く な っ た 結 果 と合 わ せ て み た ら 三 っ の 遺 伝 子 は シ ョ ウ ジ ョ ウバ エ に は な く て は な ら な い 大 事 な 役 割 を し て い て,発 現 量 が 少 な
く て も 多 く て も代 謝 に は 副 影 響 を 与 え る の が 分 か っ た 。シ ョ ウ ジ ョ ウ バ エ で の ピ ル ビ ン 酸 脱 水 素 酵 素 と2一 オ ク ソ グ ル タ ル 酸 脱 水 素 酵 素 リポ イ ル 化 プ ロ セ ス は 大 腸 菌 と は 異 な っ て い る と考 え られ る 。
5
MASTER'STHESIS
Theroleoflipoylation‑relatedgenesinenergy metabolisminDrosophila
JeonghwaDan
CellularGeneticsLaboratory DepartmentofBiologicalSciences
TokyoMetropolitanUniversity
CONrENrs ABSTRACT
MATERIALSANDMETHODS
NOnCUDORTNI STLUSER
ACKNOWLEDGEMENTS
N聡
㎜㎜㎜
DRF 803701112
FIGURELEGENDS
23582222
7
ABSTRACT
Lipoicacid(LA),alsocalledthiocticacidworksasananti‑oxidantlikevitaminC,
vitaminEandcoenzymeQIotoprotectourbodyfromtheharmoffreeradicals.
Unlikewatersolublevitamins,LAcanworkinfattytissuesbecauseitissolublein
bothwaterandfat.LAisacofactorofseveralenzymesincludingpyruvate
dehydrogenase(PDH)and2‑oxoglutaratedehydrogenase(OGDH),whichare
involvedinthemajorenergyproducingpathways,glycolysisandTCAcycle.The
pathwayoflipoylationofPDHandOGDHhasbeenwellcharacterizedinE.coli.It
hasbeenshownthatthelipoylationprocessinvolvesthreegenes;lipoicacid
synthetase(lipL・4),lipoate‑proteinligase(ILPl∠1),andlipoyltransferase(lip、8).
Eukaryotesgenomescontainorthologsoftheseenzymes,buttheirfUnctionsinLA
synthesisandincorporationintoproteinsremainedelusive.
Inthisthesis,tounderstandthegeneticbasesoflipoylationineukaryotes,Iused
Drosophilaasamodelorganismandinvestigatedtherolesof五as,∠{ρ 乙4,andLipT2,
theorthologsofl)acterialli]A,L,pIA,andli.8,respectively.Iusedthe(}AL4一 乙IAS
systemtooverexpressorRNA‑mediatedgeneknockdowninDrosophila,and
analyzedtheirphenotypesincludingviability,lifespan,metabolomes.Ialsoanalyzed
threetransposoninsertionlinesinwhich‑P‑elementsareinsertednearbyeachofthe
threeloci.
Ifbundthatubiquitousknockdownorthetransposoninsertionin五as,LiT2showed
defectinlipoylationofPDHandOGDHandtheirviabilitywasseverelyimpaired.
Theseresultsindicatedthat五as,一 ∠1フゐ4and五ipT2areessentialfbrviabilityandare
8
requiredfbrthelipoylationpathwayofPDHandOGDHinDrosoρhila.Thus,the
lipoylationpathwayislikelytobedifferentfromthatin‑E.coli.
9
INrRODUCTION
Lipoicacid(LA)isanorganosulfurcompoundderivedfromoctanoicacid(1).Itisa
fattyacidthatactsasananti‑oxidantlikevitaminC,vitaminEandcoenzymeQlo.
LAcanworkinbothwaterandfat,forminganti‑oxidationnetworktogetherwith
otheranti‑oxidantstoprotectourbodyfromharmoffreeradical.LAispresentin
almostallfbods,andatslightlyhigherconcentrationinkidney,heart,liver,spinach,
broccoli,andyeastextract(2).
EndogenouslysynthesizedLAisuniversallyrequiredfbraerobicmetabolism,works
asacofactorofpyruvatedehydrogenasecomplex(PDH)and2‑oxoglutarate
dehydrogenase(OGDH),involvedinthemajorenergyproducingpathways,
glycolysisandTCAcycle(Figurel)(3,4).Inthecell,verylittleLAexistsasafree
acidandmostofthemarecovalentlyattachedtotheE2subunitoftheseenzyme
complexesthroughaminobondtoaspecificlysineresidue(5).Thispost‑translational
modificationisessentialfortransferringreactionintermediatesamongactivesitesof
theenzymecomplexinbothcasesLAincoq)orationintoproteinpathwayin
prokaryoteswasalreadyuncovered(3).
ThepathwayoflipoylationofPDHandOGDHhasbeenwellcharacterizedinE.
coli(Figure2)(6).Thepathwayinvolvesthreelipoylation‑relatedgenes;lipoicacid
synthetase(liA),lipoate‑proteinligase(lplA),lipoyltransferase(li.8).Previous
studiesindicatethatE.co1'hasatleasttwopathwaysfbrattatchingLAtolipoyl
domains(LDs)(7).Precursortolipoicacid,octanoicacid,ismadeviafattyacid
biosynthesisintheformofoctanoyl‑acylcarrierprotein.Thelipoyltransferase(lipB)
cantransfereitheralipoyloroctanoylgroupfromaacylcarrierprotein(ACP)to
lipoyl‑acceptingdomains.ThereactionisfbllowedbyadditionofsulfUrbylipAto
producelipoylappendage.Lipoate‑proteinligase(ろ ρ乙4)catalyesthetwosteps.
Followingthisreaction,lipoicacidsynthaseconvertstheoctanoylateddomainsof
targetproteinsintolipoylmoiety(8).
Basedontherecentreport,lilpレ4‑deficient‑E.colibecomesauxotrophicforLA,which
canbetakenupandmetabolizedviathesalvagepathway.Incontrast,eukaryotesare
strictlydependentonthedenovosynthesisofthelipoylgroupwithinmitochondria.
ThishasbeenshownintheSaccharomアcescerevisiaelipsmutant(五asinDrosophilの,
whichisunabletoutilizeLAsuppliedinthegrowthmedium.Itwasalsofbundthat
earlyembryoniclethalityofLasknockoutmicecannotbeovercomeoramelioratedby
fc)edingofLAtopregnantheterozygousmice(7).
DefectofPDHcausesmetabolicacidosisaccumulatingpynlvateandlactate,and
completedeficiencyofPDHresultsindevelopmentaldefectsofthenervoussystem,
muscularspasticityandearlydeath(9).Inzebrafish,amutationinthePDH‑E2
subunitcausesneurologicaldysfUnctionandembryoniclethality(10).Diminished
OGDHfUnctionalsocausesmetabolicdeficiencyresultinginneuronaldysfUnction.
Inaddition,enzymeactivityofOGDHismarkedlydeclinedinsome
neurodegenerativediseases,suchasParkinson'sdisease,Wernick‑korsakoffsyndrome
andAlzheimer'sdisease,suggestingthatimpairmentsofglucosemetabolismcould
triggerneuronaldeathinthesediseases(ll).Amutationinlipoicacidsynthasegene
(五as)causedanovelmitochondrialdisease(12).Patientshaveseveralsymptomsthat
oralautomatismsofleftarmandlegwhichlastedforapproximatelyoneminute.They
alsoobservedincludingrecurrentapneas,reducedconsciousness,worsenedhypotonia
andlactateacidosiswhichisassociatedwithahighleveloflactateinthebloodof
newbom.Thesesymptomsmaybecausedbydeficiencyof五asandconcludethat
defectsinanyofthesestepsmightresultinasimilarbiochemicalandclinical
phenotype(13).Reductionof‑Lassignificantlydecreaseslipoylationlevelsofboth
PDHandOGDH.Thus,thesymptomsofLasdeficiencyislikelytocausethe
disru.ptionofthesemitochondrialenzymes.Althougheukaryotesappearedtocontain
orthologsoftheseenzymes,themechanismofLAsynthesisandincorporationinto
proteinsremainedelusiveineukaryotes.
HereIusedDrosophilatoinvestigatetherolesofgenesinvolvedinLAsynthesis
andcovalentattatchmentoflipoatetoPDHandOGDHthroughmanipulatingthree
lipoylation‑relatedgenes,Las,Lp∠!4,and‑Z}ipT2,thecounterpartsofbacteriallipA,
lplA,andlipB,respectively.TorevealtherolesoftheDrosoρhilahomologsoflipA
lplAandlipB,IusedRNAi‑mediatedgene㎞ockdown(KD)andoverexpression(OE) 11
ofeachgeneinDrosophilausingtheGAL4一 乙fASsystem.Thesystemhastwoparts:
theGAL4gene,encodingtheyeasttranscriptionactivatorproteinGAL4,andtheUAS
(UpstreamActivationSequence),anenhancertowhichGAL4specificallybindsto
activategenetranscription.Ialsoanalyzedthreetransposoninsertionlinesinwhich
‑P‑elementsareinsertednearbyeachofthethreeloci.
Icharacterizedthephenotypesincludingviability,lifespan,metabolomes.Ifbund
thatthechangeinexpressionlevelofeachlipoylation‑relatedgenesresultedina
shortendlifespananddecreasedlipoylationlevelinPDHandOGDH.Theactivityof
PDHwasalsodecreased,suggestingthatthreelipoylation‑relatedgenesparticipate
thelipoylationofPDHandtheycan'treplaceeachothertocompletethismechanism.
Inaddition,thelipoylation‑relatedgenesOEmodelsshowsdecreasedNAD+and
NADHratioandATPproduction.Ialsodemonstratedthatlowerbodyweightand
triglyceride(TGA)levelsinLasandL,plAOEorKDflies.Theseresultsprovided
evidencethatthreelipoylation‑relatedgenesplayanimportantroleinenergy
metabolisminDrosoρhila.
MATERIALSandMETHODS
FIystrainsandmaintenance
Thestandardlaboratorystocksyw,w川8usedascontrolstraintotransposoninsertion
linesandthefliesgeneratedbycrossingw11180rしIAS‑GFPtoGA‑L41ineswereused
ascontrolstraintoUASlines.actin‑GAL4,elav‑GAL4, .pρ1‑GAL4,UAS‑GFP,
‑P{EP}LasG6544,SUPor‑P?CG428371KGO94467,wereobtainedfromthe
BloomingtonStockCenter.‑PBac♂WH}CG9804/05071wasobtainedfromthe
ExelixisCollectionatHarvardMedicalSchoolandしIAS‑Las(CG5231?‑IR(5231R‑4?,
UAS‑LipT2(℃G9804)‑IR(9804R‑3?,UAS‑LρIA(CG8446)‑1Rで8446R‑2りwerefromFly
StockofNationalInstituteofGenetics.uAS‑Las(CG5231ノ,uAS‑LipT2ピCG9804ノ,
UAS‑∠{ρ 乙41℃G8446)weregeneratedbyourselftousefbrexperimentsasa
overexpressionstrain.Allstockswerebackcrossedtow1118strainatleastfbrsix
generationsbefbreusingfbrexperiments.Strainsusedinthisstudyaresummarized
withdetailinformation(Tablel).Allflieswererearedonastandard
glucose‑yeast‑agarmediumcontainingpropionicacidandn‑butylp‑hydroxybenzoate
asmoldinhibitors.Fliesweremaintainedat250Cthroughoutdevelopment.Flieswere
trasfc)rredtofreshvialseverythreedays
QuantitativeRT・PCR
TotalR[NAwasextractedfromadultfliesusingTRIzolreagent(lnvitrogen)andpoly
A(+)RNAwasreversetranscribedbySuperScriptIIItranscriptase(Invitrogen).
QuantitativeRT‑PCRwasperformedbyusingsYBRPremixExTaq(TaKaRa)and
Chromo4Four‑ColorReal‑TimeSystem(Bio‑Rad).Valueswerenormalizedagainst
thelevelofrp‑49mRNA.PrimersusedinthisRT‑PCRarelistedinbelow.
rρ一49primer
Forward:AAGATCGTGAAGAAGCGCAC
Reverse:TGTGCACCAGGAACTTCTTG
Lasprimer
Forward:AAGATCGTGAAGAAGCGCAC
13
Reverse:TGTGCACCAGGAACTTCTTG LipT2primer
Forward:AAGATCGTGAAGAAGCGCAC Reverse:TGTGCACCAGGAACTTCTTG LplAprimer
Forward:AAGATCGTGAAGAAGCGCAC Reverse:TGTGCACCAGGAACTTCTTG
Western止)lotting
Adultflieswerehomogenizedinl×SDS‑PAGEsamplebuffer.Thesampleswere
heatedfbr5minat950C.ProteinsinthesupernatantwereseparatedonalO%
SDS‑PAGEgelandtransferredtoaHi‑bondPmembrane(GEHealthcare,Waukesha,
WI).Afterblockingwithasolutioncontaining5%BSA,themembranewas
incubatedwithrabbitanti‑a‑Lipoicacidantibody(1:4000dilution,Calbiochem,city),
rabbitanti‑phospho‑AMPKantibody(1:4000dilution,CellsignalingTechnology,
Danvers,MA),fbrovernightat40C,rinsedwithTBST(TBSwithO.1%Tween20),
treatedwiththeblockingsolutionfbr5min,andthenincubatedwith
HRP‑cor巾gatedanti‑rabbitIgG(GEHealthcare).Signalsweredetectedusing
ECL‑plusreagents(GEHealthcare).
LOngevityteSt
Newlyeclosedflieswerekeptinaglassvialcontainingstandardglucose‑yeast medium,transferredtofreshmediaevery2‑3day,andthenumberofdeadflieswas countedatthetimeoftransfer.Atleastl20fliespereachgenotypewereusedfbrthe lOngeVityteSt.
Climbingassay
Climbingactivityassaywasperformedasdescribedpreviously(14).Twentyadult maleflieswereplacedinalongvial(2cmindiameter;20cminlength),andbumped downtothebottom.Pictu.resweretakenat8safterthebumping,andusedtomeasure
14
theheighteachindividualclimbedup.Foreachsample,3trialswerecarriedoutto determinetheaverageclimbingactivity.
Triglyceridemeasurement
Tenadultflieswereweighedandhomogenizedin100ulofO.1%Tween20(Wako),
heatedfbr5minat700Candstoredat‑80。C.Thesampleswerethawedonice,and
centrifUgedfbrlOminatl3,000rpmatroomtemperature.Theamountoftriglycerides
wasdeterminedbyusingFreeglycerolreagent,Triglyceridereagent(Sigma)to
determinethetriglyceride.Concentrationofsolubleproteinwasmeasuredbyusing
Bio‑Radproteinassayreagent.Assayswereperfbrmedatleastintriplicate.
MeasurementofPDHandOGDHactivity
Mitochondriawereisolatedfromadultfliesasdescribed(15,16).Thirtyflieswere
homogenizedinlmlchilledmitochondrialisolationmedium(MIM:250mM
sucrose,10mMTrispH7.4,0.15mMMgCl2).Thesampleswerecentrifugedtwice
f()r5minatl,000gat40Ctoremovedebris.Thesupematantwasthenspunfbr5
minatl3,000gat40C.ThepelletwaswashedwithlmlofMIMandresuspendedin
50μlofMIM.MeasurementofPDHactivitywascarriedoutaccordingto
Hinman,smethod(17).Briefly,50μgofmitochondrialsuspensionwasmixedwith
anassaybuffer(2.5mMNAD(Sigma‑Aldrich,St.Louis,MO),0.lmMcoenzyme
A,0.2mMthiaminpyrophosphate,0.3mMdithiothreitol,lmMMgCl2,lmg/ml
BSA,0.05Mphosphatebuffer,pH7.8,0.6mMIodonitroterazoliumchloride
(Sigma‑Aldrich),0.lmg/mldihydrolipoicaciddehydrogenase).Thereactionwas
initiatedbyadditionof5mMpyruvateandscannedat500nmfbr5min.OGDH
activitywasmeasuredusingtheHumphriesandSzweda'smethod.Briefly(18),50
μgofmitochondriasuspensionwasplacedtoanassaymixture(5mMMgCl2,0.5mM
EDTA,35mMphosphatebufferpH7.4,200μMthiaminepyrophosphate,0.5mM
NAD,130μMCoenzymeA(Sigma‑Aldrich),2.5μMrotenone(Sigma‑Aldrich)).
Thereactionwasstartedbyadding2mM2‑oxoglutarateandtheabsorbanceat340
nmwasmonitoredfbr2mintomeasureNADHgeneration.Allmeasurementswere 15
performedinatleasttriplicate.
Measurementofglucosemetabolites
Tenadultflieswerehomogenizedineitheracetonitrile/water(3:1)onice.
Homogenateinacetonitrile/waterwascentrifUged(fbrlOminatl20,00×g)to
removedebris.Homogenateinwaterwasmixedwith3volumeofacetonitrilebefbre
centrifUgation.ThesupernatantwasdriedupusingmiVacSampleConcentrator
(Genevac)anddissolvedin20μlofdistilledwater.Thesampleswereanalyzedby
liquidchromatographyquadropoletime‑of‑flightmassspectrometrysystemAcquity
uPLcandxevoQTofMs(waters,Milfbrd,MA).chromatographicseparationwas
performedat45。cusinganAcQuITYuPLcHssT3column(1.oxloomm,1.8
μm;waters)oranAcQuITYuPLcBEHcl8column(1.ox50mm,1.7μm;
Waters):thecolumnswereequilibratedwithlOmMDibutylammoniumacetate
(pH4.95)andcompoundswereelutedwithagradientofmethanolconcentration.The
MSsystemwasequippedwithadualelectrosprayionization(ESI)probeand
operatedinthenegativeionmodewiththesourcetemperatureatl200CThemass
scanningrangewasm/zsO‑1000.Massmeasurementwascalibratedbylockmasses
toobtainhighmassaccuracyofanalysis.Leucineenkephalin([M‑H]一=554.2620)
wasusedasalockmass.Obtainedionintensityofeachcompoundwasnormalized
againstionintensityofL‑Phenylalanine‑13C9,15N.
Statisticalanalysis
Statisticalanalysesforsurvivalswereperformedusingalog‑ranktest.Forallother experiments,meanscomparisonswereanalyzedusingaStudent'st‑test.
Results
Lipoylation・relatedgenesareimportantforviabilityin・DrosOphita
Tricarboxylicacidcycle(TCA)cycleandglycolysisarethemostimportant
carbohydratemetabolismpathwaysfbrallaerobicorganisms.Thelipoylgroupandits
associatedsubunitE2serveasthecoreofthisgiganticfactory(9).LiT2(lipBin
‑E.coli)and五as(勿 レ4in‑E.co1')isrequiredfbrlipoylationoftwomitochondrialtarget
proteins;E2subunitsofPDHandOGDH(9).TheL,plA(LρIAinE.coli)isalso
requiredfbranothermechanismthattheorganismcanutilizefreeLAfromthe
mediumandalsouseoctanoicacidasasubstrate,albeitwithreducedefficiency(9).
Thismechanismisalreadyuncoverdin‑E.coliandIfbundthatthesethreegenesare
alsoconsevedinDrosophilamelanogaster.
Inordertoinvestigateallthethreelipolation‑relatedgenes加vivofUnctionof
Drosophila,Iconstru.ctedeachgene'soverexprssiontransgenicfliesandobtained
somemutantand㎞ockdown(KD)fliesfromstockcenter.Quantitativereal‑time
PCRanalysisshowedthatmRNAexpressionlevelshavechanged(Figure4A&B).I
analyzedthephenotypesoftheseflies.FirstIcheckedlifc)spanoftheseflies(Figure
5A&B).FlieshomozygousforLasKOmutantandLasKDaswellasLρIAKDflies
werelethal.LiT2KD(drivedbyactinGA五4)shortendlifespandramaticall》i.In
addition,五asOE,.LρIAOE(drivedbyactinα4五4)alsoshortendlifespan.Theresults
suggestedthatalloftheselipoylation‑relatedgenesareimportanttoDrosoρhilaalive
andincreasedexpressionlevelofthesegenesarenotbenefitfbrDrosophila's
metabolism.
Contri‑butionoflipoylationandmetabolicdisruption
Lipoylation‑relatedgenesarerequiredfbrthelipoylmodificationoftargetproteins, E2subunitsofPDH(CG5261,PDH‑E2)andOGDH(CG5214,0GDH‑E2).
TherefbreIcomparedthelevelsoflipoylatedproteinsbetweencontrolfliesandKO orKDfliesfbreachgenebyimmunoblottinganalysisusinganti‑LAantibodythat recognizeslipoicacidcovalentlyboundtoproteins.Predictedmolecularweightsof
17
PDH‑E2andOGDH‑E2wereapproximately54kand50k,respectively.Twodistinct immunoreactivebandsweredetectedinwild‑typefliesandamountsofthesebands wereclearlyreducedinLasOE(drivedbyactinGAL4)andLiLpT2mutantflies (Figu.re6A&B&C&D).TheresultssuggestedthatPDH‑E2andOGDH‑E2arethe
targetproteinsofLasandLipT2.Thesegenesplayanimportantroleandcontributeto thelipoylationPDH‑E2andOGDH‑E2inDrosophila.TheLasOEfliesshowsa
reducedleveloflipoylationinbothPDH‑E2andOGDH‑E2,suggestingthatincreased expressionlevelofLasalsoimpairsthenomalmetabolism.Imeasuredtheenzymatic activitiesofPDHandOGDHinmitochondrialfractionisolatedfromwholebodyof adultf[ies.PDHactivitiewasincreasedinallmodelfliescomparedtocontrolf[ies (Figu.re5D).IndicatingthatlipoylationisessentialfbrthefUnctionoftheseenzymes inDrosophila.Inglycolysis,PDHconvertspyruvatetoacetyl‑CoAandinTCAcycle OGDHconvert2‑oxoglutaratetosuccinyl‑CoA.ThusIexpectthatthesemodelf[ies mayhavedefectsinglucosemetabolism;glycolysisandTCAcycle.Impairmentof
metabolicpathwaysoftenresultsinintermediarymetaboliteimbalances.Therefore,I quantifiedthecontentsofmetabolitesrelatedtoglycolysisandTCAcyclebyliquid chromatographyquadropoletime‑of‑flightmassspectrometry(LC‑MS).InLasOE (drivenbyactin‑GAL4)Ifbundthatthereareaccumulationofpyru.vateand 2‑oxoglutaratewhicharesubstratesfbrPDHandOGDH(Figure7A).Itprovidedin vivoevidencethatPDHandOGDHaredefectiveinLasOEflies.Thiscouldbethe reasonwhyPDHandOGDHactivitiesweredecreasedorwhyTCAcycleslowing downinLasOEflies.
Theenergysynthesis
GlucosemetabolismthroughglycolysisandTCAcyclereducesNADtoNADH
finallyresultinginATPgeneration.Toestimatethemetabolicactivitiesofglycolysis
andTCAcycle,ImeasuredtheNADHANADratioandATPcontentincontroland
modelflies(Figure7B&C).LasOEandLplAOE(drivedbyactin‑GAL4)shows
lowerlevelinbothNADH∠NADratioandATPcontentcomparedtocontrolflies,
suggestingthatLasOEandLplAOEflieshavemetabolicdeficiencywithinefficient 18
energysynthesis.
Metabolicanalysis
Inmetabolicprocesses,ATPasanenergysourceconvertsitbackintoitsprecursors.
WhentherearenoenoughATPtomaintainthemetabolism,theywilluse魚tbodyasa
secondenergysourcetokeepthemetabolicbalance.Ioverexpressedor㎞ock
downedeachlipoylation‑relatedgenesinDrosophila'sfatbodyusingppl‑(}A五4asa
driver,andfbundthatLα51Rf[iesshowsslowerdevelopmentspeedthancontrolf[ies
(datanotshown).TheaveragebodyweightofthelO‑day‑oldflieswassignificantly
reducedfromthatof1‑day‑oldonesin五asIRand々 フIAIRf[ies,whiletherewasno
significantdifferenceinbodyweightofwild‑typefliesduringthesameperiod(Figu.re
8A&C).InDrosophila,thefatbodyistheprimarytissuefbrenergystorageofneutral
fat,suchasdiacylglyceridesandtriglycerides(TGA)(Figure8B&D).ThentheTGA
levelinLα50EincreasedingeneralwhentheywerebomedbutafterlOdaysLα50E
and五asIRbothincreasedinTGAlevels,whichisdifferentwithcontrolfliesthat
showsincreasedlevelinTGAafterlOdays.TGAlevelsinLρIAOEaswellasllρ 肩
IRweresignificantlylessthanthatofsame‑agedcontrol.Theseresultsimplythatfat
bodycatabolismwaspromotedin五asandZ(ρ 乙40EorKDf[iesbecauseofthe
dysfUnctionofglycolysisandTCAcycle.
Lipoylation・relatedgenesinthe1)rosophitaneuroussystem
Todeterminethephysiologicalphenotypeoflipoylation‑relatedgenes,Imeasured
theirlocomotoractivitybyclimbingassay.Lipoylation‑relatedgeneswere
overexpressedinneuronsusingelav‑GAL4asadriver.AlloftheseOE,KDand
mutantfliesweredefectiveinclimbingabilitywhencomparedwithcontrolflies
(Figure9).
19
Disscusion
Lipoylationisanessentialpost‑translationalmodificationfbrPDH&OGDHtowork
inglycolysisandTCAcyle,themajorenergymetabolismpathways.Mostofstudies
onlipoylationpathwayhasbeencarriedoutinprokaryotes,andhaveshownthatthe
lypolationprocessinvolvesthreegenes;lipoylsynthaseLas,lipoyltransfc)rase五ip7『2,
lipoateproteinligaseLpIA.InthisstudyIusedDrosophilaasamulticellularmodelto
investigatetheroleoflipoylationineukaryotes.Thoughnaturalpopulationand
laboratoryselectedDrosoρhilawithlipoylation‑relatedgenescontroledhasbeenwell
studied.Itookgeneticapproachtoidentifymoleculesinvolvedinthemechanism
underlyinglipoylation.
Ifbundthatthreelipoylation‑relatedgenesalsoplayimportantrolesinDrosophila.
Thelipoylation‑relatedgenesmutantsandRNAi㎞ockdownaswellas
overexpressionDrosoρhiladramaticallyshortenedlifespaninLasOEand五iT2KD
flies.五asand∠(ρ 乙4KDfliesbecomelethalwhentheyareinearlypupastage.It's
meanthattheselipoylation‑relatedgenesarereallyimportantinDrosoρhila
metabolism.Unexpectedresultfromshortenedlifespanin五asOEsuggestthat
reducedorincreasedmRNAleveloflipoylation‑relatedgenewasnotbenefitfbr
Dros()phila.Westemblottingwithlipoicacidantibodyshoweddecreasedamountof
lipoylatedPDHandOGDHin五asOEandLipT2mutantf[iesandPDHenzyme
acitivitywasreducedinalllines.Itissuggestedthatthreelipoylation‑relatedgenes
areimportantfbrtheviabilityinDrosophila.五asandLiLpT2arerelatedtoenergy
metabolismthroughlipoylationofPDHorOGDH.Unexpectedly,overexpressed
lipoylation‑relatedgenesarenotcontributetoDrosophila'smetabolism.Onthe
contrary,theyleadmetabolicdeficiencyinDrosophila.Excessed五as〃zの めepromote
theProteinCatabolismSystemsothedecreasedquantityofPDHleadsdecreased
leveloflipoylatedPDHin五asOE.Anothercasetherearemaybeinduceproteins
competitiontogainLaswithPDHwhentheLasoverexpreesed.Ithasbeenunknown
whetherLplAparticipatethelipoylationineukaryotes.Itmaybehasalightertaskin
thispathwayorLplAmaybeworksinanotherpathwayinsteadworksinlipoylation
mechanism.Accordingtotheresultsofwestemblotting,manipulationof
lipoylation‑relatedgenesexpressionlevelhadslightlystrongerwithPDHcomparedto
OGDH.Theroleofthreelipoylation‑relatedgenesmayhavedifferentmechanism
dependingonthesubstrate.
Lipoylation‑relatedgenesalsohadanimpactonmetabolitesinglucosemetabolism.
In五asOEthereareaccumulationsofpyru.vateand2‑oxoglutarateandreductionsof
othermetabolites.Therefbre,thesemodel且iesmayhavedefectsinglucose
metabolism;glycolysisandTCAcycle.ThendecreasedATPcontentandNADH+
NADratioin五asOEsupportedthatPDHandOGDHaredefectiveinthese
Drosophila,andtherecducedPDHactivitiesandTCAcycleappearedslowingdown
in五asOEflies.EffectsonthebodyweightandTGAlevelsimpliedthatfatbody
catabolismwaspromotedinLasandLplAOEorKDf[iesbecauseofthedysfUnction
ofglycolysisandTCAcycle.Thethreelipoylation‑relatedgenesareimportantfbr
energymetabolism.Atleasttwolipoylation‑relatedgenes五asandLiLpT2are
participatethelipoylationpathwayandtheycannotbereplacedeachotherto
completeit.
ClimbingassayusedallDrosoρhilalines(drivenbyθ1α γ一GA五4)showdeficiencyin
climbingability.InDrosophilalipoylation‑relatedgenesmaycontributetothe
neuronalfUnctionssuchasGCS(glycinecleavagesystem)inhumans.
Accordingtothepreviousstudy,LipT2mutantshowednochangeinthiermetabolic
conditionwhentheyhaveenoughfreelipoicacidinthierfbod,meansL,plAin
Drosophilamaynotuse丘eelipoicacidtocompletethelipoylation.Inconclusion
therearesomedifferencesbetweeneukaryotesandprokaryotesinlipoylation
mechanism.IthinkDrosophiladidn'thavetwoindependentpathways(oneisfrom
fattyacidsynthesis,anotheroneisusefreeacidfromfood)tocompletelipoylation.In
thisstageIcan'tdecidethatwhichgenegoesfirstinthismechanismbutmaybethe
threegenesworkinthesamelineinthismechanism.LpIAinDrosophilamaynot
fUnctionaslipoateligaseproteinlike.E.coli,butitisanimportantgenefbrviabilityin
Drosophila.
21
Acknowledgement
AlwaysappreciatemyProf.ToshiroAigakiforhisadvicesandsupportsinmylifeof studyingaboard.Alwaysencouragemeandgivemesuchvaluablechancetostudyin hisworldandthought.IalsogainedmanyexperiencesinthistwoyearsthatIcouldn't learnfrombooks.It'savividmemoriesfbrme.Iamalsoconverymyappreciateto ourcellulargeneticslabmemberswhoalwaysgavemeahandwhenIwasintrouble.
References
1.TortF,Ferrer‑cort6sx,Thi6M,Navarro‑sastreA,MatalongaL,Quintana E,BujanN,AriasA,Garcia‑VilloriaJ,AcquavivaC,Vianey‑SabanC,Artuch R,Garcia‑CazorlaA,BrionesP,RibesA(2013)Mutationsinthelipoyltransferase LIPTlgenecauseafataldiseaseassociatedwithaspecificlipoylationdefectof the2‑ketoaciddehydrogenasecomplexes.HumMolGenet.2013,1‑9.
2.LesterPacker,EricH,Witt,andHansJurgenTritschler(1995)Alpha‑LipoicAcdi asaBiologicalAntioxidant.FreeRadicalBiology&Medicinel9,227‑250.
3.JordanSW&CronanJE,Jr.(1997)Biosynthesisoflipoicacidand
posttranslationalmodificationwithlipoicacidinEscherichiacoliMethods Enzymol279,176‑183.
4.ReedLJ&HackertML(1990)Structure‑functionrelationshipsin dihydrolipoamideacyltransferasesJBiolChem265,8971‑8974.
5.FujiwaraK,Okamura‑IkedaK,&MotokawaY(1996)Lipoylationof
acyltransferasecomponentsofalpha‑ketoaciddehydrogenasecomplexesJBiol Chem271,12932‑12936.
6.SquireJ.Booker(2004)UnravelingthePathwayofLipoicAcidBiosynthesis.
Chemistry&Biologyll,10‑12.
7.MelissaS.Schonauer,AlexanderJ.Kastaniotis,V.A.SamuliKursu,J.Kalervo HiltunenandCarolL.Dieckmann(2009)LipoicAcidSynthesisandAttachment inYeastMitochondria.THEJOURNALOFBIOLOGICALCHEMISTRY284,
23234‑23242
8.FatemahA.HermesandJohnE.Cronan(2013)TheroleoftheSaccharomyces
cerevisiaelipoateproteinligasehomologue,Lip3,inlipoicacidsynthesis.Yeast 30,415‑427
9.RobinsonBH(2006)LacticacidemiaandmitochondrialdiseaseMolGenetMetab 89,3‑13.
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10.BrownGK,OteroLJ,LeGrisM,&BrownRM(1994)Pyruvatedehydrogenase deficiencyJMedGenet31,875‑879.
ll.TretterL&Adam‑ViziV(2005)Alpha‑ketoglutaratedehydrogenase:atargetand generatorofoxidativestressPhilosTransRSocLondBBiolSci360,2335‑2345.
12.JohannesA.Mayr,FranzA.Zimmermann,ChristineFauth,ChristaBergheim, DavidMeierhoferDorisRadmayr,JohannesZschocke,JohannesKoch,and
WolfgangSperl(2011)LipoicAcidSynthetaseDeficiencyCausesNeonatal‑Onset Epilepsy,DefectiveMitochondrialEnergyMetabolism,andGlycineElevation.
TheAmericanJoumalofHumanGenetics89,792‑797.
13.MayrJA,ZimmermannFA,FauthC,BergheimC,MeierhoferD,RadmayrD,
ZschockeJ,KochJ,&SperlW(2011)Lipoicacidsynthetasedeficiencycauses
neonatal‑onsetepilepsy,defectivemitochondrialenergymetabolism,andglycine elevationAmJHumGenet89,792‑797.
14.TsudaM,OotakaR,OhkuraC,KishitaY,SeongKH,MatsuoT,&AigakiT (2010)LossofTrx‑2enhancesoxidativestress‑dependentphenotypesin DrosophilaFEBSLett584,3398‑3401.
15.SchwarzeSR,WeindruchR,&AikenJM(1998)Oxidativestressandaging reduceCOXIRNAandcytochromeoxidaseactivityinDrosophilaFreeRadic BiolMed25,740‑747.
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17.HinmanLM&BlassJP(1981)AnNADH‑linkedspectrophotometricassayfbr pyruvatedehydrogenasecomplexincrudetissuehomogenatesJBiolChem256, 6583‑6586.
18.HumphriesKM&SzwedaLI(1998)Selectiveinactivationofalpha‑ketoglutarate dehydrogenaseandpyruvatedehydrogenase:reactionoflipoicacidwith 4‑hydroxy‑2‑nonenalBiochemistry37,15835‑15841.
24
FIGURELEGENDS
Tablel.Strainsusedinthisstudy
Allstockswerebackcrossedtowlll8strainatleastfbrsixgenerationsbefbreusing f()rexperiments.
Figurel.Schematicrepresentationofcentralpathwaysofenergymetabolism Glycolysisdegradesglucoseandproducespyruvate,whichisconvertedinto
acetyl‑CoAbypyru.vatedehydrogenasecomplex(PDH)and2‑oxoglutaratetransfered tosuccinyl‑CoAby2‑oxoglutaratedehydrogenase(OGDH)intheTCAcycle.Lipoic acidworksasacoenzymeofthesetwoproteins.
Figure2.Pathwayforlipoylincoporationin・E.co〃
Thepathwayinvolvesthreelipoylation‑relatedgenes;lipoicacidsynthetase(lipA),
lipoate.proteinligase@ム4),lipoyltransferase(lipB).‑E.colimaintainatleasttwo
pathwaysfbrattatchingthelipoatetolipoyldomains(LDs).Precursortolipoic
acid,octanoicacid,ismadeviafattyacidbiosynthesisintheformofoctanoyl‑acyl
carrierprotein.Thelipoyltransferase(lipB,LipT2inDrosoρhilのcantransfereithera
lipoyloroctanoylgroupfromacylcarrierprotein(ACP)tolipoyl‑acceptingdomains.
ThereactionisfbllowedbyadditionofsulfUrbylipoylsynthesis(伽 ン4,Lasin
Drosoρhila,)toproducelipoylappendage.Lipoate‑proteinligase(1ρIA,々 フ!Ain
Drosophilのcatalyesthetwosteps.Followingthisreaction,lipoicacidsynthase
convertstheoctanoylateddomainsoftargetproteinsintolipoylmoiet》 乙
Figure3.TheG4L4'U4Ssystem
GAL4一 乙IASsystemisalwaysusedasabiochemicalmethodtostudygene
expressionandfunctioninorganismssuchasDros()phila.
25
Figure4.QuantitativeRT'PcRanalysis
QuantitativeRT‑PcRanalysesofeachmodelflies.ThemRNAexpressionlevels
werechanged.Unexpectly,P‑elementinsertionLasmutantfliesshowsincreaselevel
ofmRNAexpressionthanWT.Daterepresentmean±SEMofatleastthree
experiments(Stu.dent'sttest;[*]p<0.05[**]p<0.Ol[***]p<0.001).
Figure5.ShortenedLifespaninmodellines
Survivalcurvesofmodelfliesandcontrolfliesmaleandfemale.Thelongevityof mutantsandKDaswellasOEflieswasdramaticallyreducedcomparedtothatof control.
Figure6.Reductionoflipoylatedproteinsandtheiractivity
Detectionoflipoylatedproteinsinadultflies(male)usingrabbitanti‑lipoicacid
antibody(A).AllRNAiandoverexpressionlineswerecrossedtoact‑GAL4,a
ubiquitousdriver.EnzymaticactivitiesofPDHcomplex(B)weremeasuredusing
mitochondrialfraction.LipoylatedPDHenzymesweremeasuredwithsoftware
(C&D).Daterepresentmean±SEMofatleastthreeexperiments(Student'sttest;[*]
p<0.05[**]p<0.Ol[***]p<0.001)
Figure7.Metabolicdisruptioninglucosemetabolism
RelativeamountsofmetabolitesinTCAcycleandglycolysis(A).TheNADH/NAD
ratio(B),ATPcontent(C)weresignificantlydecreasedinLasOEflies.Allrelative
valueswerecalculatedagainstthedataofcontrolflies.Daterepresentmean±SEMof
atleastthreeexperiments.(Student'sttest;[*]p<0.05[**]p<0.Ol[***]p<0.001)
Figure8.ComparisonofthebodyweightandamountsofTGA
AIIRNAiandoverexpressionlineswerecrossedtopρ1‑GAL4,whichasadriverin
fatbody.(A).LasOEandKDflieslosebodyweightwithage.Triglycerides(TGA)
contentsweremeasuredatdaylanddaylO(B)it'sdecreased.(C)LplAOEandKD
fliesalsoshowlooseweightwithage.LplAOEandKDfliesshowsdecreased 26
Triglycerides(TGA)contentswhentheyareindaylOthandayl(D)Datarepresent
mean±SEMofatleastthreeexperiments.(Student'sttest;[*]p<0.05[**]
p<0.Ol[***]p<0.001)
Figure9.Clim‑bingactivity
AllRNAiandoverexpressionlineswerecrossedtoelav‑GAL4,whichisexpressed inneuron.(AandB)Locomotoractivity.Climbingactivitiesofthemodellinesflies andcontrolflies.Theactivitywasdeterminedatday3aftereclosion.Theactivitiesof alllinelowerthanthatofcontrolinclimbingassay.(Stu.dent'sttest;[*]p<0.05[**]
p<0.Ol[***]p<0.001)
27
Tablel.Strainsusedinthisstudy
straln9 Genotype Ref
Lα51R y[*]w【*】;加5(5231R‑4)/TM6,Sb,Tb N【G
Lψ721R y[*]w[*];P{w[+mW.hs]=GawB}CGlO74[NP5461]
/TM6,P{w[一]=UAS‑lacZ.UW23‑1}UW23‑1
NIG
1μ41R y[*]w[*];P{w[+mW.hs]=GawB}CG8446[NP6343]
/CyO,P{w[一]=UAS‑lacZ.UWl4}UWl4
N【G
Lα50E y[1]w[*];UAS一 五α3(CG5231)/CyO Thisstudy
Lψ720E y[1]w[*];UAS一 五ψ72(CG9804)/CyO Thisstudy 1μ40E y[1]w[*];UAS一 ムρ班(CG8446)/TM3,Sb[1]Ser[1] Thisstudy Lα5Mutant y[1]w[*];P{w[+mC]=EP}五 α3[G6544]/TM3,Sb[1]
Ser[1]
Bloomington
Lψ72Mutant y[1]w[*];Mi{y[+mDint2]=MIC}CG9804[MIO5013] Havardmedical school 4μ4Mutant y[1];P{y[+mDint2]w[BR.EBR]=SUPor‑P}CG4283
7[KGO9446]CG44243[KGO9446]/CyO;ry[506]
Bl・ ・mingt・n
Figurel.Schematicrepresentation metabolism
ofcentralpathwaysofenergy
「
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ate
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TCA CYCLE
Dehydrogenase Complex
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Figure2.PathwayforlipoylincoporationinE.coti
触 ㍉● 禦>>>NlsH
li3±●HSvqll●
Fattyac■dbiosynthesis
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romotor GAL4 UAS 1■ipoylation ene
8
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Figure4.QuantitativeRT'PCRanalysisofallmodelstrains
A
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Figure5.Lifespan
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Figure6.Reductionoflipoylatedproteinsandtheiractivity
A
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Figure7.Metabolicdisruptioninglucosemetabolism
A
︻﹂ら乙く﹂‑占︻J∩U亀乙‑占0
の↑=①乞﹂Oり①︾場6■①匡
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Figure8.ComparisonofthebodyweightandamountsofTGA
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39
Figure9.Climbingactivity
A ★05050馴∩UO︾0σ0000ワ﹁1(3︾﹀彗旧ぢ帽O=旧ρ∈旧圏O 〆
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