業績集 ： 滋賀医科大学 生化学・分子生物学講
座 分子生理化学部門
著者
滋賀医科大学 生化学・分子生物学講座 分子生理
化学部門
発行年
2014-08-04
URL
http://hdl.handle.net/10422/7147
業
績
集
滋賀医科大学
Publication List
英文原著
1. Maezawa T, Tanaka H, Nakagawa H, Ono M, Aoki M, Matsumoto M, Ishida T, Horiike K, Kobayashi K.
Planarian D-amino acid oxidase is involved in ovarian development during sexual induction.
Mech. Dev. 132, 69-78 (2014)
2. Nishimura Y, Tanaka H, Ishida T, Imai S, Matsusue Y, Agata Y, Horiike K. Immunohistochemical localization of d-serine dehydratase in chicken tissues.
ActaHistochem. S0065-1281(13)00244-4 (2014).
3. Sato T, Chiba T, Ohno S, Sato C, Sugoh T, Miyashita K, Akatsuka H, Hozumi K, Okada Y, Iida Y, Akatsuka A, Agata Y, Chiba M, Kohu K, Satake M, Tanabe H, Saya H, Habu S.
Reciprocal control of G1-phase progression is required for Th-POK/Runx3-mediated CD4/8 thymocyte cell fate decision.
J Immunol. 189, 4426-4436 (2012)
4. Higuchi T, Sakamoto S, Kakinuma Y, Kai S, Yagyu K, Todaka H, Chi E, Okada S, Ujihara T, Morisawa K, Ono M, Sugiyama Y, Ishida W, Fukushima A, Tsuda M, Agata Y, Taniguchi T.
High expression of nuclear factor 90 (NF90) leads to mitochondrial degradation in skeletal and cardiac muscles.
PLoS One 7(8):e43340 (2012)
5. Sakamoto S, Wakae K, Anzai Y, Murai K, Tamaki N, Miyazaki M, Miyazaki K, Romanow WJ, Ikawa T, Kitamura D, Yanagihara I, Minato N, Murre C, ＊Agata Y. (＊corresponding author)
E2A and CBP/p300 act in synergy to promote chromatin accessibility of the immunoglobulin κ locus.
J Immunol. 188, 5547-5560 (2012)
6. Kawamata T, Lu J, Sato T, Tanaka M, Nagaoka H, Agata Y, Toyoshima T, Yokoyama K, Oyaizu N, Nakamura N, Ando K, Tojo A and Kotani A.
Imatinibmesylate directly impairs class switch recombination through downregulation of AID.
Blood 119, 3123-3127 (2012)
7. Miyazaki M, Rivera RR, Miyazaki K, Lin YC, Agata Y, Murre C.
The opposing roles of the transcription factor E2A and its antagonist Id3 that orchestrate and enforce the naive fate of T cells.
Nat Immunol., 12, 992-1001 (2011)
8. Nozaki M, Wakae K, Tamaki N, Sakamoto S, Ohnishi K, Uejima T, Minato N, Yanagihara I, ＊Agata
Y. (＊corresponding author)
Regulation of TCR Vγ2 gene rearrangement by the helixloophelix protein, E2A.
IntImmunol., 23, 297-305 (2011)
9. Kawai Y, Hamazaki Y, Fujita H, Fujita A, Sato T, Furuse M, Fujimoto T, Jetten AM, Agata Y, Minato N.
Claudin-4 induction by E-protein activity in later stages of CD4/8 double-positive thymocytes to increase positive selection efficiency.
ProcNatlAcadSci U S A., 108, 4075-4080 (2011)
10. Tanaka H, Senda M, Nagarajan V, Yamamoto A, Senda T, Ishida T, Horiike K. Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney.
J. Biol. Chem., 286, 27548-27558 (2011)
11. Senda M, Tanaka H, Ishida T, Horiike K, Senda T.
Crystallization and preliminary crystallographic analysis of D-serine dehydratase from chicken kidney.
ActaCrystallogr Sect F Struct Biol CrystCommun, 67, 147-149 (2011)
12. Suzuki C, Murakami M, Yokobori H, Tanaka H, Ishida T, Horiike K, Nagata Y. Rapid determination of free D-serine with chicken D-serine dehydratase.
J Chromatogr B AnalytTechnol Biomed Life Sci, 879, 3326-3330 (2011)
13. Yamamoto A, Tanaka H, Ishida T, Horiike K.
Immunohistochemical localization of D-aspartate oxidase in porcine peripheral tissues.
Amino Acids, 41, 529-536 (2011)
14. Yamamoto A, Tanaka H, Ishida T, Horiike K.
D-Aspartate oxidase localization in pituitary and pineal glands of the female pig.
J. Neuroendocrinol., 22, 1165-1172 (2010)
15. Sakamoto S, Aoki K, Higuchi T, Todaka H, Morisawa K, Tamaki N, Hatano E, Fukushima A, Taniguchi T, Agata Y.
The NF90-NF45 complex functions as a negative regulator in the microRNA processing pathway.
Mol. Cell. Biol., 29, 3754-3769 (2009)
16. Kitao H, Kimura M, Yamamoto K, Seo H, Namikoshi K, Agata Y, Ohta K, Takata M. Regulation of histone H4 acetylation by transcription factor E2A in Ig gene conversion.
Int. Immunol., 20, 277-284 (2008)
17. Tanaka H, Yamamoto A, Ishida T, Horiike K.
D-Serine dehydratase from chicken kidney: a vertebral homologue of the cryptic enzyme from Burkholderia cepacia.
J. Biochem., 143, 49-57, (2008)
18. Tanaka, H., Yamamoto, A., Ishida, T., and Horiike, K.
Simultaneous measurement ofD-serine dehydratase andD-amino acid oxidase activities by
the detection of 2-oxo-acid formation with reverse-phase high-performance liquid chromatography.
Anal. Biochem. 362, 83-88, (2007)
19. Yamamoto, A., Tanaka, H., Ishida, T., and Horiike, K.
Functional and structural characterization of D-aspartate oxidase from porcine kidney: Non-Michaelis kinetics due to substrate activation.
J. Biochem. 141, 363-376, (2007)
20. Senda, M., Kishigami, S., Kimura, S., Fukuda, M., Ishida, T., and Senda, T.
Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin.
J. Mol. Biol. 373, 382-400, (2007)
21. ＊Agata Y, Tamaki N, Ikawa T, Masuda K, Sakamoto S, Kawamoto H, Murre C. (＊ corresponding author)
Regulation of T Cell Receptor β Gene Rearrangements and Allelic Exclusion by the HelixLoopHelix Protein, E47.
Immunity, 27, 871-884 (2007)
22. Katakai T, Nomura T, Gonda H, Sugai M, Agata Y, Nishio A, Masuda T, Sakaguchi S, Shimizu A. Spontaneous Large-scale Lymphoid Neogenesis and Balanced Autoimmunity versus Tolerance in the Stomach of H+/K+-ATPase-reactive TCR Transgenic Mouse.
J. Immunol., 177, 7858-7867 (2006)
23. Ishida, T., Senda, T., Tanaka, H., Yamamoto, A., and Horiike, K.
Single-turnover kinetics of 2,3-dihydroxybiphenyl 1,2-dioxygenase reacting with 3-folmyl-catechol.
Biochem. Biophys. Res. Commun. 338, 223-229, (2005)
23. Ishida, T., Tanaka, H., and Horiike, K.
Quantitative structure-activity relationship for the cleavage of C3/C4-substitutred catechols by a prototypal extradiol catechol dioxygenase with broad substrate specificity.
J. Biochem. 135, 721-730, (2004)
24. Murai K, Naruse Y, Shaul Y, Agata Y, Mori N.
Direct interaction of NRSF with TBP: chromatin reorganization and core promoter repression for neuron-specific gene transcription.
Nucleic Acids Res., 32, 3180-3189 (2004)
25. Nambu Y, Sugai M, Gonda H, Lee CG, Katakai T, Agata Y, Yokota Y, Shimizu A. Transcription-coupled events associating with immunoglobulin switch region chromatin.
Science, 302, 2137-2140 (2003)
26. Gonda H, Sugai M, Nambu Y, Katakai T, Agata Y, Mori KJ, Yokota Y, Shimizu A. The balance between Pax5 and Id2 activities is the key to AID gene expression.
J. Exp. Med., 198, 1427-1437 (2003)
27. Sayegh CE, Quong MW, Agata Y, Murre C.
E-proteins directly regulate expression of activation-induced deaminase in mature B cells.
Nat. Immunol., 4, 586-593 (2003)
27. Nakajima, H., Ishida, T., Tanaka, H., and Horiike, K.
based on enzymatic extradiol cleavage of 4-chlorocatechol: Applications to improved low-oxygen experimental systems and quantitative assessment of back diffusion of oxygen from the atmosphere.
J. Biochem. 131, 523-531, (2002)
28. Katakai T, Hara T, Sugai M, Gonda H, Nambu Y, Matsuda E, Agata Y, Shimizu A. Chemokine-independent preference of T-helper-1 cells in transendothelial migration.
J. Biol. Chem., 277, 50948-50958 (2002)
29. Sawada, O., Ishida, T., and Horiike, K.
Frontal gel chromatographic analysis of the interaction of a protein with self-associating ligands: Aberrant saturation in the binding of flavins to bovine serum albumin.
J. Biochem. 129, 899-907, (2001)
30. Yu, L., Ishida, T., Ozawa, K., Akutsu, H., and Horiike, K.
Purification and characterization of homo- and hetero-dimeric acetate kinases from the sulfate-reducing bacterium Desulfovibrio vulgaris.
J. Biochem. 129, 411-421, (2001)
31. Ye SK, Agata Y, Lee HC, Kurooka H, Kitamura T, Shimizu A, Honjo T, Ikuta K.
The IL7 receptor controls the accessibility of the TCRγ locus by Stat5 and histone acetylation.
Immunity, 15, 813-823 (2001)
32. ＊Agata Y, Katakai T, Ye SK, Sugai M, Gonda H, Honjo T, Ikuta K, Shimizu A. (＊corresponding author)
Histone acetylation determines the developmentally regulated accessibility for T cell receptor γ gene recombination.
J. Exp. Med., 193, 873-880 (2001)
33. †Agata Y, †Matsuda E, Sugai M, Katakai T, Gonda H, Shimizu A. (†co-first author)
Targeting of Krüppel-associated box-containing zinc finger proteins to centromeric heterochromatin. Implication for the gene silencing mechanisms.
J. Biol. Chem., 276, 14222-14229 (2001)
34. Horiike, K., Ishida, T., Tanaka, H,, and Arai, R. ［Review］ Distribution ofD-amino-acid oxidase andD-serine in vertebrate brains.
J. Mol. Catal. 12B, 37-41, (2001)
35. Tanaka, N., Ishida, T., Hukuda, S., and Horiike, K.
Purification of a low-molecular-weight phospholipase A2associated with soluble
high-molecular-weight acidic proteins from rabbit nucleus pulposus and its comparison with a rabbit splenic group IIa phospholipase A2.
J. Biochem. 127, 985-991, (2000)
36. Agata Y, Matsuda E, Shimizu A.
Two novel Krüppel-associated box-containing zinc-finger proteins, KRAZ1 and KRAZ2, repress transcription through functional interaction with the corepressor KAP1 (TIF1β/KRIP1).
J. Biol. Chem., 274, 16412-16422 (1999)
37. Agata Y, Matsuda E, Shimizu A.
Rapid and efficient cloning of cDNAs encoding Krüppel-like zinc finger proteins by degenerate PCR.
Gene 213, 55-64 (1998)
38. Katakai T, Agata Y, Shimizu A, Ohshima C, Nishio A, Inaba M, Kasakura S, Mori KJ, Masuda T. Structure of T cell receptor expressed on a gastritogenic T cell clone, II-6, and frequent appearance of the similar clonotypes in mice bearing autoimmune gastritis.
Int. Immunol., 9, 1849-1855 (1997)
39. Honjo, M., Ishida, T., and Horiike, K.
Semi-micro-scale frontal gel chromatography of interacting systems of a protein and small molecules: Binding of warfarin, tryptophan, or FMN to albumin, and of o-nitrophenol to catechol 2,3-dioxygenase.
J. Biochem. 122, 258-263, (1997)
40. Nishimura H, Agata Y, Kawasaki A, Sato M, Imamura S, Minato N, Yagita H, Nakano T, Honjo T. Developmentally Regulated Expression of the PD-1 Antigen on the Surface of the Double Negative (CD4- CD8-) Thymocytes.
Int. Immunol., 8, 773-780 (1996)
41. Agata Y, Kawasaki A, Nishimura H, Ishida Y, Tsubata T, Yagita H, Honjo T.
Expression of the PD-1 Antigen on the Surface of Stimulated Mouse T and B Lymphocytes.
Int. Immunol., 8, 765-772 (1996)
42. Horiike, K., Miura, R., Ishida, T., and Nozaki, M.
Stoichiometry of the water molecules in glucose oxidation revisited: Inorganic phosphate plays a unique role as water in substrate-level phosphorylation.
Biochem. Educ. 24, 17-20, (1996)
43. Ishida, T., Narita, M., Nozaki, M., and Horiike, K.
Selective cleavage and modification of the intersubunit disulfide bonds of bovine dopamine-monooxygenase: Conversion of tetramer to active dimer.
J. Biochem. 120, 346-352, (1996)
44. Miyahara, K., Ishida, T., Hukuda, S., Horiike, K., Okamoto, M., and Tojo, H. Human group II phospholipase A2in normal and diseased intervertebral discs.
Biochim. Biophys. Acta 1316, 183-190 (1996)
45. Narita, M., Ishida, T., Tomoyoshi, T., Nozaki, M., and Horiike, K.
A natural variant of bovine dopamine monooxygenase with phenylalanine as residue 208: Purification and characterization of the variant homo- and heterotetramers of (F208)4 and (F208)2(L208)2.
FEBS Lett. 396, 208-212, (1996)
46. Horiike, K., Ishida, T., and Miura, R.
Robert A. Mitchell.
Biochem. Educ. 24, 208-209, (1996)
47. Kobayashi, T., Ishida, T., Horiike, K., Takahara, Y., Numao, N., Nakazawa, A., Nakazawa, T., and Nozaki, M.
Overexpression of Pseudomonas putida catechol 2,3-dioxygenase with high specific activity by genetically engineered Escherichia coli.
J. Biochem. 117, 614-622, (1995)
48. Bhat, M. A., Ishida, T., Horiike, K., Vaidyanathan, C. S., and Nozaki, M.
Purification of 3,5-dichlorocatechol 1,2-dioxygenase, a nonheme iron dioxygenase and a key enzyme in the biodegradation of a herbicide, 2,4-dichlorophenoxyacetic acid (2,4-D), from Pseudomonas cepacia CSV90.
Arch. Biochem. Biophys. 300, 738-746, (1993)
49. Fujioka, H., Horiike, K., Takahashi, M., Ishida, T., Kinoshita, M., and Nozaki, M. Triphasic vascular effects of thiol compounds and their oxidized forms on dog coronary arteries.
Experientia 49, 47-50, (1993)
50. Ishida Y, Agata Y, Shibahara K, Honjo T.
Induced Expression of PD-1, a Novel Member of the Immunoglobulin Gene Superfamily, upon Programmed Cell Death.
EMBO J., 11, 3887-3895 (1992)
51. Tojo, H., Horiike, K., Ishida, T., Kobayashi, T., Nozaki, M., and Okamoto, M.
Analytical and micropreparative high-performance gel chromatography of proteins with a short column. Determination of molecular size, rapid determination of ligand binding constant and purification ofS-carboxymethylated proteins for microsequencing.
J. Chromatogr. 605, 205-213, (1992) 総 説 1. 縣 保年 転写因子E2AとTCRβ遺伝子の対立遺伝子排除 医学のあゆみ, 228(11), 1126-1127 (2009) 2. 田中裕之、山本篤、石田哲夫、堀池喜八郎 脊椎動物におけるD-セリンデヒドラターゼの発見と哺乳類におけるその欠損 蛋白質核酸酵素, 54, 1190-1196 (2009) 3. 縣 保年 E2AはT細胞抗原受容体遺伝子の再構成と対立遺伝子排除を制御する 細胞工学, 27(3), 258-259 (2008)
D-Serine is degraded to 3-hydroxypyruvate, not pyruvate, in the rat brain
stem and cerebellum homogenates.
In "Flavins and Flavoproteins 2008" (Frago S. et al. ed.) PrensasUniversitarias de Zaragoza, Zaragoza, Spain,521-524 (2008)
5. 千田 美紀、木村 成伸、福田 雅夫、石田 哲夫、千田 俊哉 電子伝達タンパク質間の酸化還元状態依存的親和性調節機構 化学と生物, 46, 689-696, (2008) 6. 千田 美紀、木村 成伸、福田 雅夫、石田 哲夫、千田 俊哉 反応中間体構造から明らかになった電子伝達タンパク質間の酸化還元依存的な親和性調節 機構 日本結晶学会誌, 50, 341-347, (2008)
7. Yamamoto A, Tanaka H, Ishida T, Horiike K.
Substrate activation of D-aspartate oxidase from porcine kidney.
In "Flavins and Flavoproteins 2008" (Frago S. et al. ed.) PrensasUniversitarias de Zaragoza, Zaragoza, Spain,69-73 (2008)
8. 縣 保年 遺伝子再編成におけるクロマチンのダイナミクス 蛋白質核酸酵素, 51(4), 315-325 (2006) 9. 石田 哲夫 非ヘム２価鉄イオン単核錯体を利用する酵素群 2-His-1-carboxylate 酵素の O2を利用した 多彩な反応 化学と生物, 42, 430-432, (2004) 10. 縣 保年 クロマチン修飾によるTリンパ球の抗原レセプター遺伝子組換え制御 分子細胞治療, 3(2), 203-211 (2004) 11. 生田宏一, Ye, S.K., 李海天, 縣 保年 IL-7レセプターシグナルによるTCRγ遺伝子座の組換え制御 Annual Review 免疫2002, 168-173 (2002) 12. 縣 保年, 生田宏一 ヒストンのアセチル化による抗原レセプター遺伝子組換え制御 臨床免疫36(6), 895-909 (2001) 13. 縣 保年, 生田宏一 クロマチン修飾とリモデリングによる抗原レセプター遺伝子組換え制御 実験医学19(16), 2171-2178 (2001)
