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研究の実施状況

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研究の実施状況

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研究の実施状況

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1.生物研の概要

2.平成 23 年度の業務実施状況

上記1と2に関しては、 生物研ホームページに掲載している 「平成 23 年度に係わる 業務実績報告書」 (下記アドレス) をご参照ください。

http://www.nias.affrc.go.jp/kouhyou/doc/H23fy_jisseki.pdf

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研究の実施状況

7 3.研究業績一覧

(1) 原著論文

1. Abe H, Tomitaka Y, Shimoda T, Seo S, Sakurai T, Kugimiya S, Tsuda S, Kobayashi M (2012) Antagonistic plant defense system regulated by phytohormones assists interactions among vector insect, thrips and a tospovirus Plant and Cell Physiology 53(1):204-212

2. Adachi S, Nito N, Kondo M, Yamamoto T, Arai-Sanoh Y, Ando T, Ookawa T, Yano M, Hirasawa T (2011) Identification of chromosomal regions controlling the leaf photosynthetic rate in rice by using a progeny from Japonica and high-yielding Indica varieties Plant Production Science 14(2):118-127

3. Akagi A, Dandekar A.M, Stotz H (2011) Resistance of Malus domestica fruits to Botrytis cinerea depends on endogenous ethylene biosynthesis Phytopathology 101(11):1311-1321

4. Akagi S, Yamaguchi D, Matsukawa K, Mizutani E, Hosoe M, Adachi N, Kubo M, Takahashi S (2011) Developmental ability of somatic cell nuclear transferred embryos aggregated at the 8-cell stage or 16- to 32-cell stage in cattle Journal of Reproduction and Development 57(4):500-506

5. Akasaka M, Konishi S, Izawa T, Ushiki J (2011) Histological and genetic characteristics associated with the seed-shattering habit of weedy rice (Oryza sativa L.) from Okayama, Japan Breeding Science 61(2):168-173

6. Akimoto-Tomiyama C, Furutani A, Tsuge S, Washington E.J, Nishizawa Y, Minami E, Ochiai H (2012) XopR, a type III effector secreted by Xanthomonas oryzae pv. oryzae, suppresses microbe-associated molecular pattern-triggered immunity in Arabidopsis thaliana Molecular Plant-Microbe Interactions 25(4):505-514

7. Ando A, Shigenari A, Ota M, Sada M, Kawata H, Azuma F, Kojima-Shibata C, Nakajoh M, Suzuki K, Uenishi H, Kulski J.K, Inoko H (2011) SLA-DRB1 and -DQB1 genotyping by the PCR–SSOP–Luminex method Tissue Antigens 78(1):49-55 8. Aoki S, Ikeda S, Takezawa T, Kishi T, Makino J, Uchihashi K, Matsunobu A, Noguchi M, Sugihara H, Toda S (2011)

Prolonged effect of fluid flow stress on the proliferative activity of mesothelial cells after abrupt discontinuation of fluid streaming Biochemical and Biophysical Research Communications 416(3-4):391-396

9. Aoki S, Makino J, Nagashima A, Takezawa T, Nomoto N, Uchihashi K, Matsunobu A, Sanai T, Sugihara H, Toda S (2011) Fluid flow stress affects peritoneal cell kinetics: Possible pathogenesis of peritoneal fibrosis Peritoneal Dialysis International 31(4):466-476

10. Aoki T, Scandiani M.M, O’Donnell K (2012) Phenotypic, molecular phylogenetic, and pathogenetic characterization of Fusarium crassistipitatum sp. nov., a novel soybean sudden death syndrome pathogen from Argentina and Brazil Mycoscience 53(3):167-186

11. Arakawa T, Namba O, Tateishi K (2011) Effects of coadministration of chemical insecticides with nucleopolyhedrovirus SpltNPV on the dietary intake of the common cutworm Spodoptera litura (Lepidoptera: Noctuidae) Applied Entomology and Zoology 46(3):399-405

12. Arakawa T, Yukuhiro F, Noda H (2011) Subacute and delayed toxicity of iminoctadine liquid formulation, which contains iminoctadine triacetate as an antifungal component on a nontarget domesticated insect, the silkworm, Bombyx mori L.

(Lepidoptera: Bombycidae) Pesticide Biochemistry and Physiology 100(3):239-243

13. Araki M, Numaoka A, Kawase M, Fukunaga K (2011) Origin of waxy common millet, Panicum miliaceum L. in Japan Genetic Resources and Crop Evolution 59(7):1303-1308

14. 荒谷恵梨子, 亀田恒徳, 玉田靖, 小島桂 (2012) 透析過程におけるシルクフィブロインのゲル化の制御日本シルク学会 20:85-87

15. Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M (2011) Artificial selection for a green revolution gene during japonica rice domestication Proceedings of the National Academy of Sciences of the United States of America 108(27):11034-11039

16. 浅野昌司, 宮本和久, 和田早苗, 三橋渡 (2011) BT剤の紫外線安定性に及ぼす展着剤の影響 茨城県病害虫研究会会

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17. Asano T, Hayashi N, Kobayashi M, Aoki N, Miyao A, Mitsuhara I, Ichikawa H, Komatsu S, Hirochika H, Kikuchi S, Ohsugi R (2012) A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance The Plant Journal 69(1):26-36

18. Asaoka K (2011) Effects of food source and experience on meal characteristics in the feeding behavior of the monophagous caterpillar, Bombyx mori International Journal of Wild Silkmoth and Silk 16:69-75

19. Ashikawa I, Hayashi N, Abe F, Wu J, Matsumoto T (2012) Characterization of the rice blast resistance gene Pik cloned from Kanto51 Molecular Breeding 30(1):485-494

20. Aslam A.F.M, Kiya T, Mita K, Iwami M (2011) Identification of novel bombyxin genes from the genome of the silkmoth Bombyx mori and analysis of their expression Zoological Science 28(8):609-616

21. Aya K, Suzuki G,Suwabe K, Hobo T, Takahashi H, Shiono K, Yano K, Tsutsumi N, Nakazono M, Nagamura Y, Matsuoka M, Watanabe M (2011) Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays PLoS ONE 6(10):e26162

22. Bahrini I, Ogawa T, Kobayashi F, Kawahigashi H, Handa H (2011) Overexpression of the pathogen-inducible wheat TaWRKY45 gene confers disease resistance to multiple fungi in transgenic wheat plants Breeding Science 61(4):319-326

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23. Bahrini I, Sugisawa M, Kikuchi R, Ogawa T, Kawahigashi H, Ban T, Handa H (2011) Characterization of a wheat transcription factor, TaWRKY45, and its effect on Fusarium head blight resistance in transgenic wheat plants Breeding Science 61(2):121-129

24. Bashir K, Ishimaru Y, Shimo H, Kakei Y, Senoura T, Takahashi R, Sato Y, Sato Y, Uozumi N, Nakanishi H, Nishizawa N.K (2011) Rice phenolics efflux transporter 2 (PEZ2) plays an important role in solubilizing apoplasmic iron Soil Science &

Plant Nutrition 57(6):803-812

25. Ben Hamouda A, Tanaka S, Ben Hamouda M.H, Bouain A (2011) Density-dependent phenotypic plasticity in body coloration and morphometry and its transgenerational changes in the migratory locust, Locusta migratoria Journal of Entomology and Nematology 3(7):105-116

26. Boerjan B, De Loof A, Tanaka S, Schoofs L (2011) Dispersion of peptides in vegetable oil as a simple slow release formula for both injection and oral uptake in insects: A case study with [His7]-corazonin in an albino Locusta migratoria deficient in corazonin Peptides 32(7):1536-1539

27. Bogdanove A.J, Koebnik R, Lu H, Furutani A, Angiuoli S.V, Patil P.B, Van Sluys M-A, Ryan R.P, Meyer D.F, Han S-W, Aparna G, Rajaram M, Delcher A.L, Phillippy A.M, Puiu D, Schatz M.C, Shumway M, Sommer D.D, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee S-W, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz C.M, Dorman K.S, Ronald P.C, Verdier V, Dow J.M, Sonti R.V, Tsuge S, Brendel V, Rabinowicz P.D, Leach J.E, White F.F, Salzberg S.L (2011) Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology 193(19):5450-5464

28. Buchmann J.P, Matsumoto T, Stein N, Keller B, Wicker T (2012) Inter-species sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity The Plant Journal 71(4):550-563

29. Chen G, Komatsuda T, Ma J.F, Li C, Yamaji N, Nevo E (2011) A functional cutin matrix is required for plant protection against water loss Plant Signaling & Behavior 6(9):1297-1299

30. Chen G, Komatsuda T, Ma J.F, Nawrath C, Pourkheirandish M, Tagiri A, Hu Y-G, Sameri M, Li X, Zhao X, Liu Y, Li C, Ma X, Wang A, Nair S, Wang N, Miyao A, Sakuma S, Yamaji N, Zheng X, Nevo E (2011) An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice Proceedings of the National Academy of Sciences of the United States of America 108(30):12354-12359

31. Chen H, Wei T, Saotome A, Sakaguchi K, Shikamoto Y, Mizuno H, Akita F, Shimizu T, Uehara-Ichiki T, Omura T (2012) Aggregation ability of virus-specific antibodies is correlated with their capacity to neutralize Rice dwarf virus Japan Agricultural Research Quarterly 46(1):65-71

32. Chiba M, Miura T, Kasai K, Monzen S, Kashiwakura I, Yasue H, T Nakamura T (2012) Identification of up-regulated and down-regulated cis-natural antisense transcripts in the human B lymphoblastic cell line IM-9 after X-ray irradiation Molecular Medicine Reports 5(5):1151-1157

33. Daimon T, Fujii T, Yago M, Hsu Y-F, Nakajima Y, Fujii T, Katsuma S, Ishikawa Y, Shimada T (2012) Female sex pheromone and male behavioral responses of the bombycid moth Trilocha varians: comparison with those of the domesticated silkmoth Bombyx mori Naturwissenschaften 99(3):207-215

34. Daimon T, Kozaki T, Niwa R, Kobayashi I, Furuta K, Namiki T, Uchino K, Banno Y, Katsuma S, Tamura T, Mita K, Sezutsu H, Nakayama M, Itoyama K, Shimada T, Shinoda T (2012) Precocious metamorphosis in the juvenile hormone-deficient mutant of the silkworm, Bombyx mori PLoS Genetics 8(3):e1002486

35. De Vleesschauwer D, Van Buyten E, Satoh K, Balidion J, Mauleon R, Choi I-R, Vera-Cruz C, Kikuchi S, Höfte M (2012) Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice Plant Physiology 158(4):1833-1846 36. Djedidi S, Yokoyama T, Tomooka N, Ohkama-Ohtsu N, Risal C.P, Abdelly C, Sekimoto H (2011) Phenotypic and genetic

characterization of rhizobia associated with alfalfa in the Hokkaido and Ishigaki regions of Japan Systematic and Applied Microbiology 34(6):453-461

37. Ebitani T, Hayashi N, Omoteno M, Ozaki H, Yano M, Morikawa M, Fukuta Y (2011) Characterization of Pi13, a blast resistance gene that maps to chromosome 6 in indica rice (Oryza sativa L. variety, Kasalath) Breeding Science 61(3):251- 259

38. Emran A.M, Tabei Y, Kobayashi K, Yamaoka N, Nishiguchi M (2012) Molecular analysis of transgenic melon plants showing virus resistance conferred by direct repeat of movement gene of Cucumber green mottle mosaic virus Plant Cell Reports 31:1371-1377

39. Endo M, Nakayama S, Umeda-Hara C, Ohtsuki N, Saika H, Umeda M, Toki S (2012) CDKB2 is involved in mitosis and DNA damage response in rice The Plant Journal 69(6):967-977

40. Endo-Higashi N, Izawa T (2011) Flowering-time genes Heading date 1 and Early heading date 1 together control panicle development in rice Plant and Cell Physiology 52(6):1083-1094

41. 相 爾 璇 , 蔡 媦 婷 , 謝 廷 芳 , 松 本 敏 一 , 新 野 孝 男 (2011) 乾 燥 處 理 及 超 低溫保存對兩種原生種白花蝴蝶蘭種子活力之影響台灣農業研究 60(4):309-317

42. Fu Q, Matsumoto Y, Matsumura M, Hirai Y, Sato Y, Noda H (2012) Presence of a short repeat sequence in internal transcribed spacer (ITS) 1 of the rRNA gene of Sogatella furcifera (Hemiptera: Delphacidae) from geographically different populations in Asia Applied Entomology and Zoology 47(2):95-101

43. Fuchimoto D, Senbon S, Suzuki S, Onishi A (2011) Effects of preservation of porcine oocytes by dibutyryl cyclic AMP on in vitro maturation, fertilization and development Japan Agricultural Research Quarterly 45(3):295-300

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44. Fujii T, Abe H, Yamamoto K, Katsuma S, Shimada T (2011) Interspecies linkage analysis of mo, a Bombyx mori locus associated with mosaicism and gynandromorphism Genetica 139(10):1323-1329

45. Fujimoto Z, Kimura K (2012) Crystal structure of bacteriophage ΦNIT1 zinc peptidase PghP that hydrolyzes γ-glutamyl linkage of bacterial poly-γ-glutamate Proteins: Structure, Function, and Bioinformatics 80(3):722-732

46. Fujinaga M, Yamagishi N, Ogiso H, Takeuchi J, Moriwaki J, Sato T (2011) First report of celery stunt anthracnose caused by Colletotrichum simmondsii in Japan Journal of General Plant Pathology 77(4):243-247

47. Fujiwara-Tsujii N, Yasui H, Wakamura S, Hashimoto I, Minamishima M (2012) The white-spotted longicorn beetle, Anoplophora malasiaca (Coleoptera: Cerambycidae), with a blueberry as host plant, utilizes host chemicals for male orientation Applied Entomology and Zoology 47(2):103-110

48. Fujiwara-Tsujii N, Yasui H, Wakamura S, Tanaka S, Arakaki N (2011) Determination of the amount of sex pheromone emitted by individual virgin females of the white grub beetle, Dasylepida ishigakiensis (Coleoptera:Scarabaeidae) at different stages of reproductive life Applied Entomology and Zoology 46(4):527-532

49. Fukai E, Soyano T, Umehara Y, Nakayama S, Hirakawa H, Tabata S, Sato S, Hayashi M (2012) Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1 The Plant Journal 69(4):720-730

50. 深見伶子, 山本浩二, 奥島里美, 栗山昭, 石川雅也 (2011) チシマザサ葉身及び葉鞘における凍結挙動の解析低温生

物工学会誌 57(1):71-76

51. Fukuda M, Satoh-Cruz M, Wen L, Crofts A.J, Sugino A, Washida H, Okita T.W, Ogawa M, Kawagoe Y, Maeshima M, Kumamaru T (2011) The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm Plant Physiology 157(2):632-644

52. Fukumoto T, Kano A, Ohtani K, Yamasaki-Kokudo Y, Kim B-G, Hosotani K, Saito M, Shirakawa C, Tajima S, Izumori K, Ohara T, Shigematsu Y, Tanaka K, Ishida Y, Nishizawa Y, Tada Y, Ichimura K, Gomi K, Akimitsu K (2011) Rare sugar D-allose suppresses gibberellin signaling through hexokinase-dependent pathway in Oryza sativa L. Planta 234(6):1083- 1095

53. Fukuoka S, Mizobuchi R, Saka N, Ivan S, Matsumoto T, Okuno K, Yano M (2012) A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast Theoretical and Applied Genetics 125(3):551-559

54. Fukushima S, Yoshida M, Takatsuji H (2012) Role of linkers between zinc fingers in spacing recognition by plant TFIIIA- type zinc-finger proteins Journal of Amino Acids 2012:848037

55. Furuki T, Shimizu T, Kikawada T, Okuda T, Sakurai M (2011) Salt effects on the structural and thermodynamic properties of a Group 3 LEA protein model peptide Biochemistry 50(33):7093-7103

56. 古木隆生, 清水天平, Chakraborte S, 畑中理恵, 高橋剛, 黄川田隆洋, 奥田隆, 三原久和, Tunnacliffe A, 櫻井実 (2011) グループ3LEAタンパク質の22-merモデルペプチドが示すタンパク質凝集抑制効果低温生物工学会誌 57(2):139-142 57. Gotoh H, Hirawatari K, Hanzawa N, Miura I, Wakana S (2012) QTL on mouse chromosomes 1 and 4 causing sperm-head

morphological abnormality and male subfertility Mammalian Genome 23(7-8):399-403

58. Gotoh H, Cornette R, Koshikawa S, Okada Y, Lavine L.C, Emlen D.J, Miura T (2011) Juvenile hormone regulates extreme mandible growth in male stag beetles PLoS ONE 6(6):e21139

59. Gu X-Y, Foley M.E, Horvath D.P, Anderson J.V, Feng J, Zhang L, Mowry C.R, Ye H, Suttle J.C, Kadowaki K, Chen Z (2011) Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates ABA and flavonoid synthesis in weedy red rice Genetics 189(4):1515-1524

60. 萩原慎太郎, 大田紗矢佳, 岡本智伸, 芝田猛, 矢用健一, 伊藤秀一 (2011) オガクズ床と牧草床環境がブロイラーおよ び熊本種の行動に及ぼす影響 日本暖地畜産学会報 54(1):5-14

61. Hakoyama T, Niimi K, Yamamoto T, Isobe S, Sato S, Nakamura Y, Tabata S, Kumagai H, Umehara Y, Brossuleit K, Petersen T.R, Sandal N, Stougaard J, Udvardi M.K, Tamaoki M, Kawaguchi M, Kouchi H, Suganuma N (2012) The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules Plant and Cell Physiology 53(1):225-236

62. Hamada H, Kurusu T, Okuma E, Nokajima H, Kiyoduka M, Koyano T, Sugiyama Y, Okada K, Koga J, Saji H, Miyao A, Hirochika H, Yamane H, Murata Y, Kuchitsu K (2012) Regulation of a proteinaceous elicitor-induced Ca2+ influx and production of phytoalexins by a putative voltage-gated cation channel, OsTPC1, in cultured rice cells Journal of Biological Chemistry 287(13):9931-9939

63. Hasegawa H, Noguchi J, Yamashita M, Okada R, Sugimoto R, Furuya M, Unoki T, Funakoshi Y, Baba T, Kanaho Y (2012) Phosphatidylinositol 4-phosphate 5-kinase is indispensable for mouse spermatogenesis Biology of Reproduction 86(5):136 64. Hashimoto T, Kawazu T, Nagasaki T, Murakami A, Yamaoka T (2012) Quantitative comparison between poly(L-arginine)

and poly(L-lysine) at each step of polyplex-based gene transfection using a microinjection technique Science and Technology of Advanced Materials 13(1):015009

65. 畑中理恵, 薦田 (萩原) 優香, 金森保志, 藤田弥佳, コルネット ・ リシャー, 奥田隆, 黄川田隆洋 (2011) ネムリユスリ カLEAタンパク質(PvLEA4)の機能解析低温生物工学会誌 57(2):135-138

66. Hattori M, Nakamura M, Komatsu S, Tsuchihara K, Tamura Y, Hasegawa T (2012) Molecular cloning of a novel calcium- binding protein in the secreted saliva of the green rice leafhopper Nephotettix cincticeps Insect Biochemistry and Molecular Biology 42(1):1-9

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67. Hattori S, Terada D, Teramoto H, Kameda T, Tamada Y, Kobayashi H, Honda T, Yoshikawa C (2012) Influence of sterilisations on silk protein-based materials Bioinspired, Biomimetic and Nanobiomaterials 1(3):195-199

68. Hayashi K, Ushizawa K, Hosoe M, Takahashi T (2011) Differential gene expression of serine protease inhibitors in bovine ovarian follicle: possible involvement in follicular growth and atresia Reproductive Biology and Endocrinology 9:72 69. Hayashi S, Wakasa Y, Takahashi H, Kawakatsu T, Takaiwa F (2012) Signal transduction by IRE1-mediated splicing of

bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice The Plant Journal 69(6):946-956 70. Higuchi-Takeuchi M, Ichikawa T, Kondou Y, Matsui K, Hasegawa Y, Kawashima M, Sonoike K, Mori M, Hirochika H,

Matsui M (2011) Functional analysis of two isoforms of leaf-type ferredoxin-NADP+-oxidoreductase in rice using the heterologous expression system of Arabidopsis Plant Physiology 157(1):96-108

71. 日本典秀, 檜垣智美, 前田太郎, 長森茂之, 富所康広 (2011) マイクロサテライトDNAマーカーを利用した天敵評価

物防疫 65(5):274-279

72. Hirano R, Naito K, Fukunaga K, Watanabe K.N, Ohsawa R, Kawase M (2011) Genetic structure of landraces in foxtail millet (Setaria italica (L.) P. Beauv.) revealed with transposon display and interpretation to crop evolution of foxtail millet Genome 54(6):498-506

73. Hirokawa M, Tatematsu K (2011) The order of four homeotic-mutant genes, Nc, ECw, EKp and EMu, on the 6th-linkage group of Bombyx mori Journal of Insect Biotechnology and Sericology 80(2):41-48

74. Hirota T, Sayama T, Yamasaki M, Sasama H, Sugimoto T, Ishimoto M, Yoshida S (2012) Diversity and population structure of black soybean landraces originating from Tanba and neighboring regions Breeding Science 61(5):593-601

75. Hokama Y, Arakaki N, Nagayama A, Kobayashi A, Ando T, Tanizaki S, Yasui H, Akino T, Wakamura S (2011) Presence of allochronic populations of the white grub beetle Dasylepida ishigakiensis (Coleoptera: Scarabaeidae) on Ishigaki Island, Japan Applied Entomology and Zoology 46(4):471-476

76. Honda K, Ômura H, Chachin M, Kawano S, Inoue T.A (2011) Synergistic or antagonistic modulation of oviposition response of two swallowtail butterflies, Papilio maackii and P. protenor, to Phellodendron amurense by its constitutive prenylated flavonoid, phellamurin Journal of Chemical Ecology 37(6):575-581

77. Huang C-F, Yamaji N, Ono K, Ma J.F (2012) A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots The Plant Journal 69(4):565-576

78. Ibrahim N, Handa H, Cosset A, Koulintchenko M, Konstantinov Y, Lightowlers R.N, Dietrich A, Weber-Lotfi F (2011) DNA delivery to mitochondria: Sequence specificity and energy enhancement Pharmaceutical Research 28(11):2871-2882 79. Ichikawa A, Ono H, Echigo T, Mikata Y (2011) Crystal structures and chiral recognition of the diastereomeric salts prepared

from 2-methoxy-2-(1-naphthyl)propanoic acid CrystEngComm 13(14):4536-4548

80. Ichinose H, Diertavitian S, Fujimoto Z, Kuno A, Leggio L.L, Kaneko S (2012) Structure-based engineering of glucose specificity in a family 10 xylanase from Streptomyces olivaceoviridis E-86 Process Biochemistry 47(3):358-365

81. Ikeda S, Okubo T, Takeda N, Banba M, Sasaki K, Imaizumi-Anraku H, Fujihara S, Ohwaki Y, Ohshima K, Fukuta Y, Eda S, Mitsui H, Hattori M, Sato T, Shinano T, Minamisawa K (2011) The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions Applied and Environmental Microbiology 77(13):4399-4405

82. Ikeda-Kawakatsu K, Maekawa M, Izawa T, Itoh J, Nagato Y (2012) ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1 The Plant Journal 69(1):168-180

83. Iki T, Yoshikawa M, Meshi T, Ishikawa M (2012) Cyclophilin 40 facilitates HSP90-mediated RISC assembly in plants The EMBO Journal 31(2):267-278

84. Imai T, Ohashi Y, Mitsuhara I, Seo S, Toshima H, Hasegawa M (2012) Identification of a degradation intermediate of the momilactone a rice phytoalexin by the rice blast fungus Bioscience, Biotechnology and Biochemistry 76(2):414-416 85. Ishikawa A, Ogawa K, Gotoh H, Walsh T.K, Tagu D, Brisson J.A, Rispe C, S Jaubert-Possamai S, Kanbe T, Tsubota T,

Shiotsuki T, Miura T (2012) Juvenile hormone titre and related gene expression during the change of reproductive modes in the pea aphid Insect Molecular Biology 21(1):49-60

86. Ishikawa R, Aoki M, Kurotani K, Yokoi S, Shinomura T, Takano M, Shimamoto K (2011) Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice Molecular Genetics and Genomics 285(6):461-470

87. Ishimaru Y, Kakei Y, Shimo H, Bashir K, Sato Y, Sato Y, Uozumi N, Nakanishi H, Nishizawa N.K (2011) A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele Journal of Biological Chemistry 286(28):24649-24655

88. Ishimaru Y, Takahashi R, Bashir K, Shimo H, Senoura T, Sugimoto K, Ono K, Yano M, Ishikawa S, Arao T, Nakanishi H, Nishizawa N.K (2012) Characterizing the role of rice NRAMP5 in manganese, iron and cadmium transport Scientific Reports 2:286

89. Itoh H, Izawa T (2011) A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice Plant Signaling & Behavior 6(12):1932-1936

90. Iwamoto M, Kiyota S, Hanada A, Yamaguchi S, Takano M (2011) The multiple contributions of phytochromes to the control of internode elongation in rice Plant Physiology 157(3):1187-1195

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91. Iwanaga M, Hitotsuyama T, Katsuma S, Ishihara G, Daimon T, Shimada T, Imanishi S, Kawasaki H (2012) Infection study of Bombyx mori macula-like virus (BmMLV) using a BmMLV-negative cell line and an infectious cDNA clone Journal of Virological Methods 179(2):316-324

92. Iwasaki K, Miwa Y, Ogawa H, Yazaki S, Iwamoto M, Furusawa T, Onishi A, Kuzuya T, Haneda M, Watarai Y, Uchida K, Kobayashi T (2012) Comparative study on signal transduction in endothelial cells after anti-A/B and human leukocyte antigen antibody reaction: Implication of accommodation Transplantation 93(4):390-397

93. Izawa T, Mihara M, Suzuki Y, Gupta M, Itoh H, Nagano A.J, Motoyama R, Sawada Y, Yano M, Yokota Hirai M, Makino A, Nagamura Y (2011) Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field The Plant Cell 23(5):1741-1755

94. Javadi F, Tun Tun Y, Kawase M, Guan K, Yamaguchi H (2011) Molecular phylogeny of the subgenus Ceratotropis (genus Vigna, Leguminosae) reveals three eco-geographical groups and Late Pliocene–Pleistocene diversification: evidence from four plastid DNA region sequences Annals of Botany 108(2):367-380

95. Kabir K.E, Koga D, Konno K, Takanashi T (2012) Fluorescein-5 isothiocyanate conjugated-chitin-binding domain probe (FITC-CBD)-coupled detection of chitin in the peritrophic membrane of Monochamus alternatus (Coleoptera:

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96. Kaedei Y, Naito M, Naoi H, Sato Y, Taniguchi M, Tanihara F, Kikuchi K, Nagai T, Otoi T (2012) Effects of ( − )-epigallocatechin gallate on the motility and penetrability of frozen–thawed boar spermatozoa incubated in the fertilization medium Reproduction in Domestic Animals 47(6):880-886

97. Kaga A, Shimizu T, Watanabe S, Tsubokura Y, Katayose Y, Harada K, Vaughan D.A, Tomooka N (2012) Evaluation of soybean germplasm conserved in NIAS genebank and development of mini core collections Breeding Science 61(5):566- 592

98. Kaihara K, Kotaki T, Numata H, Ohfune Y, Shinada T (2012) Structure-activity relationship of novel juvenile hormone, JHSB3, isolated from the stink bug, Plautia stali Tetrahedron 68(1):106-113

99. Kameda T, Hashimoto T, Tamada Y (2011) Effects of supercooling and organic solvent on the formation of a silk sponge with porous 3-D structure, and its dynamical and structural characterization using solid-state NMR Journal of Materials Science 46(24):7923-7930

100. Kameda T, Kojima K, Zhang Q, Sezutsu H (2012) Identification of hornet silk gene with a characteristic repetitive sequence in Vespa simillima xanthoptera Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 161(1):17-24

101. Kamimura M, Saito H, Niwa R, Niimi T, Toyoda K, Ueno C, Kanamori Y, Shimura S, Kiuchi M (2012) Fungal ecdysteroid- 22-oxidase: a new tool for manipulating ecdysteroid signaling and insect development Journal of Biological Chemistry 287(20):16488-16498

102. Kaneko A, Tamada Y, Hirai S, Kuzuya T, Hashimoto T (2012) Characterization of a silk-resinified compact fabricated using a pulse-energizing sintering device Macromolecular Materials and Engineering 297(3):272-278

103. Kano A, Hosotani K, Gomi K, Yamasaki-Kokudo Y, Shirakawa C, Fukumoto T, Ohtani K, Tajima S, Izumori K, Tanaka K, Ishida Y, Nishizawa Y, Ichimura K, Tada Y, Akimitsu K (2011) D-Psicose induces upregulation of defense-related genes and resistance in rice against bacterial blight Journal of Plant Physiology 168(15):1852-1857

104. Kasajima I, Ebana K, Yamamoto T, Takahara K, Yano M, Kawai-Yamada M, Uchimiya H (2011) Molecular distinction in genetic regulation of nonphotochemical quenching in rice Proceedings of the National Academy of Sciences of the United States of America 108(33):13835-13840

105. Kasuya E, Kushibiki S, Yayou K, Hodate K, Ogino M, Sutoh M (2012) The effect of lighting conditions on the rhythmicity of growth hormone secretion in Holstein steers Animal Science Journal 83(3):238-244

106. Katayama M, Fukuda T, Okamuara T, Suda Y, Suzuki E, Uenishi H, Suzuki K (2011) Immunophenotype characterization for swine selected line, which is resistant for the Mycoplasma Pneumonia Asian-Australasian Journal of Animal Sciences 24(7):889-897

107. Katayose Y, Kanamori H, Shimomura M, Ohyanagi H, Ikawa H, Minami H, Shibata M, Ito T, Kurita K, Ito K, Tsubokura Y, Kaga A, Wu J, Matsumoto T, Harada K, Sasaki T (2012) DaizuBase, an integrated soybean genome database including BAC-based physical maps Breeding Science 61(5):661-664

108. Kato T, Segami S, Toriyama M, Kono I, Ando T, Yano M, Kitano H, Miura K, Iwasaki Y (2011) Detection of QTLs for grain length from large grain rice (Oryza sativa L.) Breeding Science 61(3):269-274

109. Kawahigashi H, Kasuga S, Okuizumi H, Kanamori H, Ando T, Matsumoto T (2011) Classification of genotypes of the target leaf spot-resistant gene (ds1) in a sorghum collection Crop Science 51(5):2095-2103

110. Kawakami M, Tomita N, Shimada Y, Yamamoto K, Tamada Y, Kachi N, Suguro T (2011) Chondrocyte distribution and cartilage regeneration in silk fibroin sponge Bio-medical Materials and Engineering 21(1):53-61

111. Kawano A, Tsukimoto M, Mori D, Noguchi T, Harada H, Takenouchi T, Kitani H, Kojima S (2012) Regulation of P2X7- dependent inflammatory functions by P2X4 receptor in mouse macrophages Biochemical and Biophysical Research Communications 420(1):102-107

112. Kawano A, Tsukimoto M, Noguchi T, Hotta N, Harada H, Takenouchi T, Kitani H, Kojima S (2012) Involvement of P2X4 receptor in P2X7 receptor-dependent cell death of mouse macrophages Biochemical and Biophysical Research Communications 419(2):374-380

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113. Kawaoka S, Kadota K, Arai Y, Suzuki Y, Fujii T, Abe H, Yasukochi Y, Mita K, Sugano S, Shimizu K, Tomari Y, Shimada T, Katsuma S (2011) The silkworm W chromosome is a source of female-enriched piRNAs RNA 17(12):2144-2151

114. Kawaura K, Wu J, Matsumoto T, Kanamori H, Katagiri S, Ogihara Y (2012) Genome change in wheat observed through the structure and expression of α/β-gliadin genes Functional & Integrative Genomics 12(2):341-355

115. Kawazu K, Mochizuki A, Sato Y, Sugeno W, Murata M, Seo S, Mitsuhara I (2012) Different expression profiles of jasmonic acid and salicylic acid inducible genes in the tomato plant against herbivores with various feeding modes Arthropod-Plant Interactions 6(2):221-230

116. Khodayari H, Saeidi H, Rahiminejad M.R, Komatsuda T (2011) Transferability and polymorphism of barley microsatelite markers across H-genome containing species in the genus Hordeum (H. vulgare and H. bulbosum) The Iranian Journal of Botany 17(2):200-211

117. Kikuchi R, Kawahigashi H, Oshima M, Ando T, Handa H (2012) The differential expression of HvCO9, a member of the CONSTANS-like gene family, contributes to the control of flowering under short-day conditions in barley Journal of Experimental Botany 63(2):773-784

118. Kim C, Kim J, Kikuchi S, Choi J, Kim Y, Park H, Seol Y, Park D, Hahn J, Kim Y (2011) Computational identification of Chinese cabbage anthocyaninspecific genes BioChip Journal 5(2):184-192

119. Kim H, Terakami S, Nishitani C, Kurita K, Kanamori H, Katayose Y, Sawamura Y, Saito T, Yamamoto T (2012) Development of cultivar-specific DNA markers based on retrotransposon-based insertional polymorphism in Japanese pear Breeding Science 62(1):53-62

120. Kim S-H, Oikawa T, Kyozuka J, Wong H.L, Umemura K, Kishi-Kaboshi M, Takahashi A, Kawano Y, Kawasaki T, Shimamoto K (2012) The bHLH rac immunity1 (RAI1) is activated by OsRac1 via OsMAPK3 and OsMAPK6 in rice immunity Plant and Cell Physiology 53(4):740-754

121. Kim T-H, Hauser F, Ha T, Xue S, Böhmer M, Nishimura N, Munemasa S, Hubbard K, Peine N, Lee B-h, Lee S, Robert N, Parker J.E, Schroeder J.I (2011) Chemical genetics reveals negative regulation of abscisic acid signaling by a plant immune response pathway Current Biology 21(11):990-997

122. Kim Y-M, Kiso Y, Muraki T, Kang M-S, Nakai H, Saburi W, Lang W, Kang H-K, Okuyama M, Mori H, Suzuki R, Funane K, Suzuki N, Momma M, Fujimoto Z, Oguma T, Kobayashi M, Kim D, Kimura A (2012) Novel dextranase catalyzing cycloisomaltooligosaccharide-formation and identification of catalytic amino acids and their functions using chemical rescue approach Journal of Biological Chemistry 287(24):19927-19935

123. Kim Y-M, Shimizu R, Nakai H, Mori H, Okuyama M, Kang M-S, Fujimoto Z, Funane K, Kim D, Kimura A (2011) Truncation of N- and C-terminal regions of Streptococcus mutans dextranase enhances catalytic activity Applied Microbiology and Biotechnology 91(2):329-339

124. Kim Y-S, Lim S, Yoda H, Choi Y-E, Sano H (2011) Simultaneous activation of salicylate production and fungal resistance in transgenic Chrysanthemum producing caffeine Plant Signaling & Behavior 6(3):409-412

125. Kishimoto H, Maeda T, Wright L.C, James D.G (2011) Identification of prey consumed by Stethorus punctum picipes (Casey) (Cleoptera: Coccinellidae) in tree fruit and vines in Washington State, USA International Journal of Acarology 37(Suppl.

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126. 北夕紀, 安藤麻子, 田中景子, 猪子英俊, 椎名隆, 細道一善, 上西博英 (2011) 次世代シークエンサーRoche 454FLX を用いたMHCタイピング法と遺伝子発現解析法の開発 DNA多型 19:223-229

127. Kita Y.F, Ando A, Tanaka K, Suzuki S, Ozaki Y, Uenishi H, Inoko H, Kulski J.K, Shiina T (2012) Application of high- resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes Immunogenetics 64(3):187-199

128. Kitamoto K.H, Shinozaki Y, Cao X-h, Morita T, Konishi M, Tago K, Kajiwara H, Koitabashi M, Yoshida S, Watanabe T, Sameshima-Yamashita Y, Nakajima-Kambe T, Tsushima S (2011) Phyllosphere yeasts rapidly break down biodegradable plastics AMB Express 1:44

129. Kitamoto N, Kaga A, Kuroda Y, Ohsawa R (2012) A model to predict the frequency of integration of fitness-related QTLs from cultivated to wild soybean Transgenic Research 21(1):131-138

130. Kitani H, Takenouchi T, Sato M, Yoshioka M, Yamanaka N (2011) A simple and efficient method to isolate macrophages from mixed primary cultures of adult liver cells Journal of Visualized Experiments (51):2757

131. Kiyota S, Xie X, Takano M (2012) Phytochromes A and C cooperatively regulate early and transient gene expression after red-light irradiation in rice seedlings Plant Physiology and Biochemistry 51:10-17

132. Kobayashi H, Kawasaki K, Takeishi K, Noda H (2011) Symbiont of the stink bug Plautia stali synthesizes rough-type lipopolysaccharide Microbiological Research 167(1):48-54

133. Kobayashi I, Tsukioka H, Kômoto N, Uchino K, Sezutsu H, Tamura T, Kusakabe T, Tomita S (2012) SID-1 protein of Caenorhabditis elegans mediates uptake of dsRNA into Bombyx cells Insect Biochemistry and Molecular Biology 42(2):148-154

134. Kobayashi T, Matsuki N, Yokosuka T (2011) Genetic isolation of the sorghum plant bug Stenotus rubrovittatus (Hemiptera:

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135. Kobayashi T, Takada M, Takagi S, Yoshioka A, Washitani I (2011) Spider predation on a mirid pest in Japanese rice fields Basic and Applied Ecology 12(6):532-539

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136. Kojima M, Ashino T, Yoshida T, Iwakura Y, Degawa M (2011) Interleukin-1 controls the constitutive expression of the Cyp7a1 gene by regulating the expression of Cyp7a1 transcriptional regulators in the mouse liver Biological &

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137. Kojima M, Ashino T, Yoshida T, Iwakura Y, Degawa M (2012) Involvement of interleukin-1 in lead nitrate-induced hypercholesterolemia in mice Biological & Pharmaceutical Bulletin 35(2):246-250

138. Kokuho T, Dang H.V, Yasue H (2012) Molecular cloning of the swine interleukin-23 subunit p19 and of its receptor components interleukin-23R α and -12Rβ1 Journal of Veterinary Medical Science 74(3):367-372

139. Komatsu K, Hwang T-Y, Takahashi M, Sayama T, Funatsuki H, Oki N, Ishimoto M (2012) Identification of QTL controlling post-flowering period in soybean Breeding Science 61(5):646-652

140. Komatsu M, Kojima M, Okamura H, Nishio M, Kaneda M, Kojima T, Takeda H, Malau-Aduli A.E.O, Takahashi H (2012) Age-related changes in gene expression of the growth hormone secretagogue and growth hormone-releasing hormone receptors in Holstein-Friesian cattle Domestic Animal Endocrinology 42(2):83-93

141. Komatsu S, Deschamps T, Hiraga S, Kato M, Chiba M, Hashiguchi A, Tougou M, Shimamura S, Yasue H (2011) Characterization of a novel flooding stress-responsive alcohol dehydrogenase expressed in soybean roots Plant Molecular Biology 77(3):309-322

142. Kômoto N, Yukuhiro K, Tomita S (2012) Novel gene rearrangements in the mitochondrial genome of a webspinner, Aposthonia japonica (Insecta: Embioptera) Genome 55(3):222-233

143. Kondo N, Tomooka N (2012) New sources of resistance to Cadophora gregata f. sp. adzukicola and Fusarium oxysporum f.

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144. Kongjaimun A, Kaga A, Tomooka N, Somta P, Shimizu T, Shu Y, Isemura T, Vaughan D.A, Srinives P (2012) An SSR-based linkage map of yardlong bean (Vigna unguiculata (L.) Walp. subsp. unguiculata Sesquipedalis Group) and QTL analysis of pod length Genome 55(2):81-92

145. Kongjaimun A, Kaga A, Tomooka N, Somta P, Vaughan D.A, Srinives P (2012) The genetics of domestication of yardlong bean, Vigna unguiculata (L.) Walp. ssp. unguiculata cv.-gr. sesquipedalis Annals of Botany 109(6):1185-1200

146. Konishi T, Aohara T, Igasaki T, Hayashi N, Miyazaki Y, Takahashi A, Hirochika H, Iwai H, Satoh S, Ishii T (2011) Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls Phytochemistry 72(16):1962-1968

147. Koshi K, Ushizawa K, Kizaki K, Takahashi T, Hashizume K (2011) Expression of endogenous retrovirus-like transcripts in bovine trophoblastic cells Placenta 32(7):493-499

148. Kotani N, Maeda K, Watanabe T, Hiramatsu M, Gong L-k, Bi Y-a, Takezawa T, Kusuhara H, Sugiyama Y (2011) Culture- period-dependent changes in the uptake of transporter substrates in sandwich-cultured rat and human hepatocytes Drug Metabolism and Disposition 39(9):1503-1510

149. Kouzai Y, Mochizuki S, Saito A, Ando A, Minami E, Nishizawa Y (2012) Expression of a bacterial chitosanase in rice plants improves disease resistance to the rice blast fungus Magnaporthe oryzae Plant Cell Reports 31(4):629-636

150. Kurusu T, Yamanaka T, Nakano M, Takiguchi A, Ogasawara Y, Hayashi T, Iida K, Hanamata S, Shinozaki K, Iida H, Kuchitsu K (2012) Involvement of the putative Ca2+-permeable mechanosensitive channels, NtMCA1 and NtMCA2, in Ca2+

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151. Kusano M, Fukushima A, Fujita N, Okazaki Y, Kobayashi M, Fujita Oitome N, Ebana K, Saito K (2012) Deciphering starch quality of rice kernels using metabolite profiling and pedigree network analysis Molecular Plant 5(2):442-451

152. Kushiro M, Saitoh H, Sugiura Y, Aoki T, Kawamoto S, Sato T (2012) Experimental infection of Fusarium proliferatum in Oryza sativa plants; fumonisin B1 production and survival rate in grains International Journal of Food Microbiology 156(3):204-208

153. Kusumi K, Sakata C, Nakamura T, Kawasaki S, Yoshimura A, Iba K (2011) A plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress conditions The Plant Journal 68(6):1039-1050

154. 楠岡真理子, 七夕高也, 古谷雅理, 斎藤隆文 (2011) 時空間投影画像を用いた植物生長量の抽出 画像電子学会誌

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155. 桑名芳彦, 小島桂, 玉田靖 (2012) 外来タンパク質融合組換え繭糸の引張り物性-緑色蛍光タンパク質とオニグモ牽引

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156. Kyoda K, Baba K, Kitano H, Onami S (2011) A proof of the DBRF-MEGN method, an algorithm for deducing minimum equivalent gene networks Source Code for Biology and Medicine 6:12

157. Lacey M.J, Sémon E, Krasulová J, Sillam-Dussès D, Robert A, Cornette R, Hoskovec M, Žáček P, Valterová I, Bordereau C (2011) Chemical communication in termites: syn-4,6-Dimethylundecan-1-ol as trail-following pheromone, syn-4,6- dimethylundecanal and (5E)-2,6,10-trimethylundeca-5,9-dienal as the respective male and female sex pheromones in Hodotermopsis sjoestedti (Isoptera, Archotermopsidae) Journal of Insect Physiology 57(12):1585-1591

158. Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Theil S, Reboux S, Amano N, Flutre T, Pelegrin C, Ohyanagi H, Seidel M, Giacomoni F, Reichstadt M, Alaux M, Gicquello E, Legeai F, Cerutti L, Numa H, Tanaka T, Mayer K, Itoh T, Quesneville H, Feuillet C (2012) TriAnnot:a versatile and high performance pipeline for the automated annotation of plant genomes Frontiers in Plant Science 3:5

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159. Maeda T (2011) Foraging experiences affect the importance of chemical cues in patch-leaving decision of Neoseiulus womersleyi Schicha (Acari, Phytoseiidae) Journal of the Acarological Society of Japan 20(1):9-18

160. Maeno K, Tanaka S (2012) Adult female desert locusts require contact chemicals and light for progeny gregarization Physiological Entomology 37(2):109-118

161. Maeno K, Tanaka S (2011) Phase-specific responses to different qualities of food in the desert locust, Schistocerca gregaria:

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162. Marui J, Yamane N, Ohashi-Kunihiro S, Ando T, Terabayashi Y, Sano M, Ohashi S, Ohshima E, Tachibana K, Higa Y, Nishimura M, Koike H, Machida M (2011) Kojic acid biosynthesis in Aspergillus oryzae is regulated by a Zn(II)2Cys6 transcriptional activator and induced by kojic acid at the transcriptional level Journal of Bioscience and Bioengineering 112(1):40-43

163. Marzougui S, Sugimoto K, Yamanouchi U, Shimono M, Hoshino T, Hori K, Kobayashi M, Ishiyama K, Yano M (2012) Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice Theoretical and Applied Genetics 124(5):893-902

164. Mase K, Hirayama C, Okada E, lizuka T, Kadono-Okuda K, Narukawa J, Yamamoto K (2011) Reinstatement of the 27th linkage group in the classical linkage map of Bombyx mori by molecular linkage analysis of faint-green cocoon gene Journal of Insect Biotechnology and Sericology 80(2):71-77

165. Matsubara K, Ebana K, Mizubayashi T, Itoh S, Ando T, Nonoue Y, Ono N, Shibaya T, Ogiso E, Hori K, Fukuoka S, Yano M (2011) Relationship between transmission ratio distortion and genetic divergence in intraspecific rice crosses Molecular Genetics and Genomics 286(5-6):307-319

166. Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, Yano M (2012) Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering Plant and Cell Physiology 53(4):709-716

167. Matsuda F, Okazaki Y, Oikawa A, Kusano M, Nakabayashi R, Kikuchi J, Yonemaru J, Ebana K, Yano M, Saito K (2012) Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis The Plant Journal 70(4):624-636

168. Matsumoto T, Nakajima I, Eguchi-Ogawa T, Nagamura Y, Hamasima N, Uenishi H (2012) Changes in gene expression in a porcine preadipocyte cell line during differentiation Animal Genetics 43(5):535-544

169. Matsumoto T, Okumura N, Uenishi H, Hayashi T, Hamasima N, Awata T (2012) Population structure of pigs determined by single nucleotide polymorphisms observed in assembled expressed sequence tags Animal Science Journal 83(1):14-22 170. Matsumoto T, Okumura N, Uenishi H, Hayashi T, Hamasima N, Awata T (2012) Porcine single nucleotide polymorphism

(SNP) development and population structure of pigs assessed by validated SNPs Biochemical Genetics 50(5-6):428-439 171. Matsumoto Y, Matsumura M, Hoshizaki S, Sato Y, Noda H (2011) The strepsipteran parasite Elenchus japonicus (Strepsiptera,

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172. Matsuura T, Mizuno A, Tsukamoto T, Shimizu Y, Saito N, Sato S, Kikuchi S, Uzuki T, Azegami K, Sawada H (2012) Erwinia uzenensis sp. nov., a novel pathogen that affects European pear trees (Pyrus communis L.) International Journal of Systematic and Evolutionary Microbiology 62:1799-1803

173. Matsuura Y, Takehira M, Sawano M, Ogasahara K, Tanaka T, Yamamoto H, Kunishima N, Katoh E, Yutani K (2012) Role of charged residues in stabilization of Pyrococcus horikoshii CutA1, which has a denaturation temperature of nearly 150 °C FEBS Journal 279(1):78-90

174. Matsuyama S, Ohkura S, Mogi K, Wakabayashi Y, Mori Y, Tsukamura H, Maeda K, Ichikawa M, Okamura H (2011) Morphological evidence for direct interaction between kisspeptin and gonadotropin-releasing hormone neurons at the median eminence of the male goat: An immunoelectron microscopic study Neuroendocrinology 94(4):323-332

175. Mayer K.F.X, Martis M, Hedley P.E, Šimková H, Liu H, Morris J.A, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Doležel J, Waugh R, Stein N (2011) Unlocking the barley genome by chromosomal and comparative genomics The Plant Cell 23(4):1249-1263

176. Mentlak T.A, Kombrink A, Shinya T, Ryder L.S, Otomo I, Saitoh H, Terauchi R, Nishizawa Y, Shibuya N, Thomma B.P.H.J, Talbota N.J (2012) Effector-mediated suppression of chitin-triggered immunity by Magnaporthe oryzae is necessary for rice blast disease The Plant Cell 24(1):322-335

177. Michikawa M, Ichinose H, Momma M, Biely P, Jongkees S, Yoshida M, Kotake T, Tsumuraya Y, Withers S, Fujimoto Z, Kaneko S (2012) Structural and biochemical characterization of glycoside hydrolase family 79 β-glucuronidase from Acidobacterium capsulatum Journal of Biological Chemistry 287(17):14069-14077

178. Mishra B, Kizaki K, Koshi K, Ushizawa K, Takahashi T, Hosoe M, Sato T, Ito A, Hashizume K (2012) Expression of extracellular matrix metalloproteinase inducer (EMMPRIN) and its expected roles in the bovine endometrium during gestation Domestic Animal Endocrinology 42(2):63-73

179. Mita T, Matsumoto Y (2012) First description of the male of Gonatopus javanus (R.C.L. Perkins) determined by mitochondrial COI sequence (Hymenoptera: Dryinidae) Entomological Science 15(2):214-218

180. Mitsuhashi W, Ikeda H, Muraji M (2011) Fifty-year trend towards suppression of Wolbachia-induced male-killing by its butterfly host, Hypolimnas bolina Journal of Insect Science 11:92

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182. Miura K, Sato A, Ohta M, Furukawa J (2011) Increased tolerance to salt stress in the phosphate-accumulating Arabidopsis mutants siz1 and pho2 Planta 234(6):1191-1199

183. Miyamoto K, Shimizu T, Mochizuki S, Nishizawa Y, Minami E, Nojiri H, Yamane H, Okada K (2012) Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice Protoplasma 29 March

184. Miyao A, Nakagome M, Ohnuma T, Yamagata H, Kanamori H, Katayose Y, Takahashi A, Matsumoto T, Hirochika H (2012) Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing Plant and Cell Physiology 53(1):256-264

185. Miyashita N, Kubo Y, Yonai M, Kaneyama K, Saito N, Sawai K, Minamihashi A, Suzuki T, Kojima T, Nagai T (2011) Cloned cows with short telomeres deliver healthy offspring with normal-length telomeres Journal of Reproduction and Development 57(5):636-642

186. 三好孝典, 清水伸一, 篠崎毅, 澤田宏之 (2011) リアルタイム定量PCR法によるイチジク株枯病菌の絶対定量および検

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187. Mizuno H, Kawahara Y, Wu J, Katayose Y, Kanamori H, Ikawa H, Itoh T, Sasaki T, Matsumoto T (2011) Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5 Frontiers in Plant Science 2:16

188. Mon H, Kobayashi I, Ohkubo S, Tomita S, Lee J, Sezutsu H, Tamura T, Kusakabe T (2012) Effective RNA interference in cultured silkworm cells mediated by overexpression of Caenorhabditis elegans SID-1 RNA Biology 9(1)

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190. Morita Y, Saito R, Ban Y, Tanikawa N, Kuchitsu K, Ando T, Yoshikawa M, Habu Y, Ozeki Y, Nakayama M (2012) Tandemly arranged chalcone synthase A genes contribute to the spatially regulated expression of siRNA and the natural bicolor floral phenotype in Petunia hybrida The Plant Journal 70(5):739-749

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206. Naito M, Harumi T, Kuwana T (2012) Expression of GFP gene in cultured PGCs isolated from embryonic blood and incorporation into gonads of recipient embryos The Journal of Poultry Science 49(2):116-123

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209. Nakagawa S, Maedomari N, Kikuchi K, Nagai T, Miyano T, Fulka J.Jr, Manabe N (2011) Vitrification of fully grown and growing porcine oocytes using germinal vesicle transfer Journal of Reproduction and Development 57(3):335-341

210. Nakai M, Ito J, Sato K, Noguchi J, Kaneko H, Kashiwazaki N, Kikuchi K (2011) Pre-treatment of sperm reduces success of ICSI in the pig Reproduction 142(2):285-293

211. Nakajima K, Kinoshita H, Miura M (2011) Effects of raw silk size and twist number on characteristics of twisted silk yarn Journal of Insect Biotechnology and Sericology 80(1):9-13

212. 中島健一, 木下晴夫, 三浦幹彦 (2011) 薄地織物および厚地織物の官能検査の分析と風合い値との比較蚕糸・昆虫

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215. Nakayama S (2012) Inter-MITE polymorphisms of a newly identified MITE show relationships among sugarcane (Saccharum) species Genetic Resources and Crop Evolution 59(7):1389-1396

216. Narita S, Kageyama D, Hiroki M, Sanpei T, Hashimoto S, Kamitoh T, Kato Y (2011) Wolbachia-induced feminisation newly found in Eurema hecabe, a sibling species of Eurema mandarina (Lepidoptera: Pieridae) Ecological Entomology 36(3):309- 317

217. Nemoto K, Ito S, Yoshida C, Miyata M, Kojima M, Degawa M (2011) Hepatic expression of spermatogenic genes and their transiently remarkable downregulations in Wistar-Kyoto rats in response to lead-nitrate administration: strain-difference in the gene expression patterns The Journal of Toxicological Sciences 36(3):357-364

218. Nemoto K, Yasuda T, Hikida T, Ito S, Kojima M, Degawa M (2011) Effects of lead nitrate on liver weight and serum total cholesterol amounts in stroke-prone spontaneously hypertensive and Wistar-Kyoto rats Journal of Health Science 57(2):192-196

219. Ngernyuang N, Kobayashi I, Promboon A, Ratanapo S, Tamura T, Ngernsiri L (2011) Cloning and expression analysis of the Bombyx mori α-amylase gene (Amy) from the indigenous Thai silkworm strain, Nanglai Journal of Insect Science 11:38 220. Nishikiori M, Mori M, Dohi K, Okamura H, Katoh E, Naito S, Meshi T, Ishikawa M (2011) A host small GTP-binding

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225. Ogawa D, Abe K, Miyao A, Kojima M, Sakakibara H, Mizutani M, Morita H, Toda Y, Hobo T, Sato Y, Hattori T, Hirochika H, Takeda S (2011) RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice Nature Communications 2:278

226. 小木野瑞奈, 松浦晶央, 山﨑淳, 入交眞巳, 櫛引史郎, 新宮博行, 粕谷悦子, 甫立孝一 (2012) パワースペクトル解析

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227. Ohnishi S, Miyake N, Takeuchi T, Kousaka F, Hiura S, Kanehira O, Saito M, Sayama T, Higashi A, Ishimoto M, Tanaka Y, Fujita S (2012) Fine mapping of foxglove aphid (Aulacorthum solani) resistance gene Raso1 in soybean and its effect on tolerance to Soybean dwarf virus transmitted by foxglove aphid Breeding Science 61(5):618-624

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229. Oka K, Mochizuki T, Ohki S.T (2012) Detection of carrot red leaf virus-RNA in carrot seeds by multiplex RT-nested PCR Journal of General Plant Pathology 78(1):2-7

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230. Okada K, Kimura M, Moriyama Y, Nakai M, Kikuchi K, Kaneko H, Kunieda T, Baba T, Noguchi J (2011) Expression analysis of MIF4GD in the rat testis Journal of Reproduction and Development 57(2):256-261

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233. 大川雅央, 新野孝男, 白田和人, 長峰司 (2012) 農民の権利に係る国際状況とわが国の現状に対する提言 育種学研究

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234. Oki N, Komatsu K, Sayama T, Ishimoto M, Takahashi M, Takahashi M (2012) Genetic analysis of antixenosis resistance to the common cutworm (Spodoptera litura Fabricius) and its relationship with pubescence characteristics in soybean (Glycine max (L.) Merr.) Breeding Science 61(5):608-617

235. Oono Y, Kawahara Y, Kanamori H, Mizuno H, Yamagata H, Yamamoto M, Hosokawa S, Ikawa H, Akahane I, Zhu Z, Wu J, Itoh T, Matsumoto T (2011) mRNA-seq reveals a comprehensive transcriptome profile of rice under phosphate stress Rice 4(2):50-65

236. Osanai-Futahashi M, Fujiwara H (2011) Coevolution of telomeric repeats and telomeric repeat-specific non-LTR retrotransposons in insects Molecular Biology and Evolution 28(11):2983-2986

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239. Ozawa K, Wakasa Y, Ogo Y, Matsuo K, Kawahigashi H, Takaiwa F (2012) Development of an efficient Agrobacterium- mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and β1,2-xylosyltransferase Plant and Cell Physiology 53(4):755-761

240. O’Donnell K, Humber R.A, Geiser D.M, Kang S, Park B, Robert V, Crous P.W, Johnston P, Aoki T, Rooney A.P, Rehner S.A (2012) Phylogenetic diversity of insecticolous fusaria inferred from multilocus DNA sequence data and their molecular identification via FUSARIUM-ID and Fusarium MLST Mycologia 104(2):427-445

241. Park Y-J, Nemoto K, Nishikawa T, Matsushima K, Minami M, Kawase M (2011) Genetic diversity and expression analysis of granule bound starch synthase I gene in the new world grain amaranth (Amaranthus cruentus L.) Journal of Cereal Science 53(3):298-305

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244. Rice WRKY Working Group (2012) Nomenclature report on rice WRKY’s -Conflict regarding gene names and its solution Rice 5:3

245. Rowshan J, Kumagae M, Nishibori M, Yasue H, Wada Y (2011) Japanese silkie fowls are widely distributed in the phylogenetic tree derived from mitochondrial complete D-loop nucleotide sequences The Journal of Poultry Science 48(3):176-180

246. Sabree Z.L, Huang C.Y, Arakawa G, Tokuda G, Lo N, Watanabe H, Moran N.A (2012) Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis Applied and Environmental Microbiology 78(1):204-210

247. Saika H, Oikawa A, Matsuda F, Onodera H, Saito K, Toki S (2011) Application of gene targeting to designed mutation breeding of high-tryptophan rice Plant Physiology 156(3):1269-1277

248. Saisho D, Ishii M, Hori K, Sato K (2011) Natural variation of barley vernalization requirements: Implication of quantitative variation of winter growth habit as an adaptive trait in East Asia Plant and Cell Physiology 52(5):738-749

249. Saito H, Ogiso-Tanaka E, Okumoto Y, Yoshitake Y, Izumi H, Yokoo T, Matsubara K, Hori K, Yano M, Inoue H, Tanisaka T (2012) Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions Plant and Cell Physiology 53(4):717-728

250. Saito R, Kohno K, Okada Y, Osada Y, Numata K, Kohama C, Watanabe K, Nakaoka H, Yamamoto N, Kanai A, Yasue H, Murata S, Abe K, Tomita M, Ohkohchi N, Kiyosawa H (2011) Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes BMC Medical Genomics 4:42

251. Sakai H, Mizuno H, Kawahara Y, Wakimoto H, Ikawa H, Kawahigashi H, Kanamori H, Matsumoto T, Itoh T, Gaut B.S (2011) Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes Genome Biology and Evolution 3:1357-1368

252. Sakai T, Mochizuki S, Haga K, Uehara Y, Suzuki A, Harada A, Wada T, Ishiguro S, Okada K (2012) The WAVY GROWTH 3 E3 ligase family controls the gravitropic response in Arabidopsis roots The Plant Journal 70(2):303-314

253. Sakuma C, Sato M, Takenouchi T, Chiba J, Kitani H (2012) Critical roles of the WASP N-terminal domain and Btk in LPS- induced inflammatory response in macrophages PLoS ONE 7(1):e30351

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254. Sakumoto R, Vermehren M, Kenngott R.A, Okuda K, Sinowatz F (2011) Localization of gene and protein expressions of tumor necrosis factor-α and tumor necrosis factor receptor types I and II in the bovine corpus luteum during the estrous cycle Journal of Animal Science 89(10):3040-3047

255. Sakurai T, Mitsuno H, Haupt S.S, Uchino K, Yokohari F, Nishioka T, Kobayashi I, Sezutsu H, Tamura T, Kanzaki R (2011) A single sex pheromone receptor determines chemical response specificity of sexual behavior in the silkmoth Bombyx mori PLoS Genetics 7(6):e1002115

256. Sameri M, Pourkheirandish M, Chen G, Tonooka T, Komatsuda T (2011) Detection of photoperiod responsive and non- responsive flowering time QTL in barley Breeding Science 61(2):183-188

257. Sano N, Permana H, Kumada R, Shinozaki Y, Tanabata T, Yamada T, Hirasawa T, Kanekatsu M (2012) Proteomic analysis of embryonic proteins synthesized from long-lived mRNAs during germination of rice seeds Plant and Cell Physiology 53(4):687-698

258. Saruta M, Takada Y, Kikuchi A , Yamada T, Komatsu K, Sayama T, Ishimoto M, Okabe A (2012) Screening and genetic analysis of resistance to peanut stunt virus in soybean: identification of the putative Rpsv1 resistance gene Breeding Science 61(5):625-630

259. Sarver B.A.J, Ward T.J, Gale L.R, Broz K, Corby Kistler H, Aoki T, Nicholson P, Carter J, O’Donnell K (2011) Novel fusarium head blight pathogens from Nepal and Louisiana revealed by multilocus genealogical concordance Fungal Genetics and Biology 48(12):1096-1107

260. 笹川由紀, 石川達夫, 田部井豊 (2011) 遺伝子組換え農作物の理解増進のための情報提供に及ぼす体験型双方向コ

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261. Sato M, Ohtsuka M, Miura H, Miyoshi K, Watanabe S (2012) Determination of the optimal concentration of several selective drugs useful for generating multi-transgenic porcine embryonic fibroblasts Reproduction in Domestic Animals 47(5):759-765

262. Sato M, Akasaka E, Saitoh I, Ohtsuka M, Watanabe S (2012) Development of a technique for efficient gene transfer to antral follicular cells in the mouse ovary Systems Biology in Reproductive Medicine 58(3):136-141

263. Sato M, Sawahata R, Takenouchi T, Kitani H (2011) Identification of Fyn as the binding partner for the WASP N-terminal domain in T cells International Immunology 23(8):493-502

264. Sato S, Hayashi T, Kobayashi E (2011) Characterization of porcine autism susceptibility candidate 2 as a candidate gene for the number of corpora lutea in pigs Animal Reproduction Science 126(3-4):211-220

265. Sato S, Hayashi T, Kobayashi E (2011) Fine mapping the number of corpora lutea quantitative trait loci on SSC3: Analysis of the porcine follicle-stimulating hormone receptor gene Animal Science Journal 82(5):633-641

266. 澤田宏之, 綿打享子, 功刀幸博 (2011) ブドウ斑点細菌病菌 (Xanthomonas arboricola) と核果類せん孔細菌病菌 (X.

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267. Saze H, Tsugane K, Kanno T, Nishimura T (2012) DNA Methylation in plants: Relationship to small RNAs and histone modifications, and functions in transposon inactivation Plant and Cell Physiology 53(5):766-784

268. Scandiani M.M, Ruberti D.S, Giorda L.M, Pioli R.N, Luque A.G, Bottai H, Ivancovich J.J, Aoki T, O’Donnell K (2011) Comparison of inoculation methods for characterizing relative aggressiveness of two soybean sudden-death syndrome pathogens, Fusarium virguliforme and F. tucumaniae Tropical Plant Pathology 36(3):133-140

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272. Sekizawa K, Yamamoto S, Rafique T, Fukui K, Niino T (2011) Cryopreservation of in vitro-grown shoot tips of carnation (Dianthus caryophyllus L.) by vitrification method using aluminium cryo-plates Plant Biotechnology 28(4):401-405 273. Sembon S, Fuchimoto D, Iwamoto M, Suzuki S, Yoshioka K, Onishi A (2011) A simple method for producing tetraploid

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274. Sembon S, Iwamoto M, Hashimoto M, Oishi T, Fuchimoto D, Suzuki S, Yazaki S, Onishi A (2012) Porcine androgenetic embryos develop to fetal stage in recipient mothers Theriogenology 78(1):225-231

275. Seo E-K, Nakamura H, Mori M, Asami T (2012) Screening and characterization of a chemical regulatorfor plant disease resistance Bioorganic & Medicinal Chemistry Letters 22(4):1761-1765

276. Seo M-S, Takahashi S, Kadowaki K, Kawamukai M, Takahara M, Takamizo T (2011) Expression of CoQ10-producing ddsA transgene by efficient Agrobacterium-mediated transformation in Panicum meyerianum Plant Cell, Tissue and Organ Culture 107(2):325-332

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