A.; not available

Table SIII-3. Concentration of fumarate in starved culture of R. palustris CGA009.

Incubation conditions Fumarate concentration (µmol L

^-1

)

^a

Dark 5day vial

^b

-1 15.22

Dark 5day vial-2 12.06

Light 5day vial-1 N.D.

Light 5day vial-2 N.D.

Light 5day vial-3 N.D.

a

Fumarate in supernatant of starved culture in R. palustris was checked by HPLC analysis.

b

Data are presented as the means of two (dark) or three (light) independent vials.

N.D.; not detected.

Table SIII-4. The high expression genes from the top of high expression gene in the light and dark were 638 and 646, respectively, that covering 90% of total signal.

The high expressed genes in the starved cells of R. palustris CGA009 in the light

Acc. No. definition COG signal %

rpa_rna52 r16S_1_16S rRNA 16S ribosomal RNA RNA 18.3666

rpa_rna51 r23S_1_23S rRNA 23S ribosomal RNA RNA 15.4373

rpa_rna57 rrnB_Ribosomal RNA RNA 9.8257

rpa_rna58 r23S_2_23S rRNA 23S ribosomal RNA RNA 5.7376

rpa_rna50 r5S_1_5S rRNA 5S ribosomal RNA RNA 3.5223

rpa_rna59 rnpB_unknown type RNA 2.5134

rpa_rna3 tRNA-Leu1_Transfer RNAs RNA 0.8611

rpa_rna34 tRNA-Ser1_Transfer RNAs RNA 0.5920

rpa_rna48 tRNA-Ala4_Transfer RNAs RNA 0.5629

rpa_rna47 tRNA-Ile2_Transfer RNAs RNA 0.5498

rpa_rna28 tRNA-Asp1_Transfer RNAs RNA 0.4538

rpa_rna41 tRNA-Ala2_Transfer RNAs RNA 0.4294

rpa_rna33 tRNA-Glu2_Transfer RNAs RNA 0.2907

rpa_rna2 tRNA-Thr1_Transfer RNAs RNA 0.2860

rpa_rna6 tRNA-Ala1_Transfer RNAs RNA 0.2802

rpa_rna21 tRNA-Gln2_Transfer RNAs RNA 0.2667

rpa_rna10 tRNA-Gln1_Transfer RNAs RNA 0.2220

rpa_rna9 tRNA-Val1_Transfer RNAs RNA 0.2093

rpa_rna60 ffs_unknown type RNA 0.1644

rpa_rna5 tRNA-Glu1_Transfer RNAs RNA 0.1537

rpa_rna30 tRNA-Asn1_Transfer RNAs RNA 0.1386

rpa_rna23 tRNA-Tyr1_Transfer RNAs RNA 0.1335

rpa_rna7 tRNA-Arg1_Transfer RNAs RNA 0.1149

rpa_rna12 tRNA-Met1_Transfer RNAs RNA 0.1144

rpa_rna14 tRNA-Met3_Transfer RNAs RNA 0.1123

rpa_rna36 tRNA-Val3_Transfer RNAs RNA 0.1059

rpa_rna4 tRNA-Thr2_Transfer RNAs RNA 0.1001

rpa_rna43 tRNA-Ser4_Transfer RNAs RNA 0.0970

rpa_rna40 tRNA-Ser3_Transfer RNAs RNA 0.0933

rpa_rna11 tRNA-Pro1_Transfer RNAs RNA 0.0919

rpa_rna49 tRNA-His1_Transfer RNAs RNA 0.0912

rpa_rna8 tRNA-Arg2_Transfer RNAs RNA 0.0811

rpa_rna35 tRNA-Ser2_Transfer RNAs RNA 0.0779

rpa_rna26 tRNA-Leu3_Transfer RNAs RNA 0.0747

rpa_rna15 tRNA-Lys1_Transfer RNAs RNA 0.0546

rpa_rna37 tRNA-Leu5_Transfer RNAs RNA 0.0530

rpa_rna29 tRNA-Lys2_Transfer RNAs RNA 0.0453

rpa_rna42 tRNA-Gly3_Transfer RNAs RNA 0.0437

rpa_rna39 tRNA-Gly2_Transfer RNAs RNA 0.0426

rpa_rna17 tRNA-Pro3_Transfer RNAs RNA 0.0392

rpa_rna20 tRNA-Thr3_Transfer RNAs RNA 0.0369

rpa_rna24 tRNA-Gly1_Transfer RNAs RNA 0.0361

rpa_rna19 tRNA-Arg3_Transfer RNAs RNA 0.0324

rpa_rna16 tRNA-Pro2_Transfer RNAs RNA 0.0319

rpa_rna46 tRNA-Phe1_Transfer RNAs RNA 0.0286

rpa_rna56 tmRNA_unknown type RNA 0.0263

rpa_rna18 tRNA-Val2_Transfer RNAs RNA 0.0233

rpa_rna31 tRNA-Cys1_Transfer RNAs RNA 0.0221

rpa_rna38 tRNA-Arg5_Transfer RNAs RNA 0.0196

rpa_rna25 tRNA-Trp1_Transfer RNAs RNA 0.0193

rpa1206 aldehyde dehydrogenase Energy production and

Conversion 0.0665

rpa4394 isocitrate lyase Energy production and

Conversion 0.0621

rpa4822 possible alcohol dehydrogenase Energy production and

Conversion 0.0508

rpa1535 cytochrome c2 Energy production and

Conversion 0.0478

rpa4666 carbon-monoxide dehydrogenase small subunit

Energy production and

Conversion 0.0469

rpa0672 4-hydroxybenzoyl-CoA reductase, third of three subunits

Energy production and

Conversion 0.0342

rpa4669 putative racemase Energy production and

Conversion 0.0318

rpa1192 cytochrome b6-F complex iron-sulfur subunit

Energy production and

Conversion 0.0316

rpa4667 putative carbon-monoxide dehydrogenase large subunit

Energy production and

Conversion 0.0279

rpa1955 glutathione dependent formaldehyde dehydrogenase

Energy production and

Conversion 0.0279

rpa3450 putative malonic semialdehyde oxidative decarboxylase

Energy production and

Conversion 0.0266

rpa0016 cytochrome-c oxidase fixP chain Energy production and

Conversion 0.0263

rpa3392 possible nifU homolog Energy production and

Conversion 0.0259

rpa1733 putative ferredoxin Energy production and

Conversion 0.0234

rpa3215 putative nitroreductase Energy production and

Conversion 0.0214

rpa1224 putative indolepyruvate ferredoxin oxidoreductase, alpha subunit

Energy production and

Conversion 0.0209

rpa3803 carbon-monoxide dehydrogenase small subunit

Energy production and

Conversion 0.0201

rpa2153 aldehyde dehydrogenase Energy production and

Conversion 0.0188

rpa0059 L-carnitine dehydratase/bile acid-inducible protein F

Energy production and

Conversion 0.0184

rpa2314 cytochrome c556 Energy production and

Conversion 0.0174

rpa1205 putative alcohol dehydrogenase Energy production and

Conversion 0.0173

rpa4750 electron transfer flavoprotein beta chain, (ETFSS)

Energy production and

Conversion 0.0163

rpa1668 Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit

Energy production and

Conversion 0.0160

rpa0360 phosphoenolpyruvate carboxykinase Energy production and

Conversion 0.0156

rpa0018 cytochrome-c oxidase fixO chain Energy production and

Conversion 0.0138

rpa2458 putative cytochrome b561 Energy production and

Conversion 0.0136

rpa4410 glycerol-3-phosphate dehydrogenase Energy production and

Conversion 0.0133

rpa3802 carbon monoxide dehydrogenase medium

subunit Energy production and

Conversion 0.0121

rpa1991 conserved hypothetical protein Energy production and

Conversion 0.0119

rpa3834 NADP-dependent isocitrate dehydrogenase Energy production and

Conversion 0.0118

rpa1532 geranylgeranyl reductase Energy production and

Conversion 0.0114

prpa2 partition protein Cell Division and Chromosome

Partitioning 0.0606

rpa4077 ATPase, ParA type Cell Division and Chromosome

Partitioning 0.0249

rpa1622 conserved unknown protein Cell Division and Chromosome

Partitioning 0.0139

rpa3033 possible acetylornitine deacetylase Amino Acid Transport and

Metabolism 1.0201

rpa0870 putative ornithine decarboxylase Amino Acid Transport and

Metabolism 0.9082

rpa4020 possible branched-chain amino acid transport system permease protein

Amino Acid Transport and

Metabolism 0.4570

rpa3810 putative periplasmic binding protein of ABC transporter

Amino Acid Transport and

Metabolism 0.1635

rpa1789 putative branched-chain amino acid transport system substrate-binding protein

Amino Acid Transport and

Metabolism 0.1061

rpa2966 nitrogen regulatory protein P-II Amino Acid Transport and

Metabolism 0.1030

rpa3093 possible urea/short-chain binding protein of ABC transporter

Amino Acid Transport and

Metabolism 0.0920

rpa3725 possible leucine/isoleucine/valine-binding protein precursor

Amino Acid Transport and

Metabolism 0.0807

rpa2046 2-isopropylmalate synthase Amino Acid Transport and

Metabolism 0.0709

rpa2446 putative aminotransferase Amino Acid Transport and

Metabolism 0.0686

rpa1798

putative periplasmic binding protein for ABC transporter for branched chain amino acids

Amino Acid Transport and

Metabolism 0.0578

rpa0230 aspartate-semialdehyde dehydrogenase Amino Acid Transport and

Metabolism 0.0549

rpa0668 putative ABC transporter subunit, substrate-binding component

Amino Acid Transport and

Metabolism 0.0545

rpa2503 possible aminotransferase Amino Acid Transport and

Metabolism 0.0472

rpa4807 possible branched-chain amino acid transport system substrate-binding protein

Amino Acid Transport and

Metabolism 0.0416

rpa3297 possible branched-chain amino acid transport system substrate-binding protein

Amino Acid Transport and

Metabolism 0.0409

rpa4331 aspartate aminotransferase A Amino Acid Transport and

Metabolism 0.0403

rpa0557 cysteine synthase, cytosolic O-acetylserine(thiol)lyase

Amino Acid Transport and

Metabolism 0.0391

rpa1664 Glyoxalase/Bleomycin resistance protein/dioxygenase domain

Amino Acid Transport and

Metabolism 0.0387

rpa3724 periplasmic binding protein Amino Acid Transport and

Metabolism 0.0385

rpa4019 putative branched-chain amino acid ABC transporter system substrate-binding protein

Amino Acid Transport and

Metabolism 0.0382

rpa3669

putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor

Amino Acid Transport and

Metabolism 0.0353

rpa4772 ornithine carbamoyltransferase Amino Acid Transport and

Metabolism 0.0351

rpa1651 possible leucine/isoleucine/valine-binding protein precursor

Amino Acid Transport and

Metabolism 0.0347

rpa0027 2-dehydro-3-deoxyphosphoheptonate aldolase

Amino Acid Transport and

Metabolism 0.0346

rpa1741 possible branched-chain amino acid transport system substrate-binding protein

Amino Acid Transport and

Metabolism 0.0341

rpa2763 putative O-acetylhomoserine sulfhydrylase Amino Acid Transport and

Metabolism 0.0242

rpa2193

putative ABC transporter, perplasmic binding protein, branched chain amino acids

Amino Acid Transport and

Metabolism 0.0241

rpa3719

putative high-affinity branched-chain amino acid transport system ATP-binding protein

Amino Acid Transport and

Metabolism 0.0230

rpa2491 N-acetylglutamate semialdehyde dehydrogenase

Amino Acid Transport and

Metabolism 0.0228

rpa2724 glycine hydroxymethyltransferase Amino Acid Transport and

Metabolism 0.0228

rpa4813

possible branched chain amino acid periplasmic binding protein of ABC transporter

Amino Acid Transport and

Metabolism 0.0211

rpa4209 glutamine synthetase II Amino Acid Transport and

Metabolism 0.0210

rpa0235 3-isopropylmalate dehydratase small subunit

Amino Acid Transport and

Metabolism 0.0194

rpa4179 conserved unknown protein Amino Acid Transport and

Metabolism 0.0189

rpa1283 homoserine/homoserine lactone/threonine efflux protein

Amino Acid Transport and

Metabolism 0.0182

rpa4034 ABC transporter, periplasmic branched chain amino acid binding protein

Amino Acid Transport and

Metabolism 0.0182

rpa3060 leucine aminopeptidase Amino Acid Transport and

Metabolism 0.0170

rpa4773 putative acetylornithine aminotransferase Amino Acid Transport and

Metabolism 0.0162

rpa0240 3-isopropylmalate dehydratase Amino Acid Transport and

Metabolism 0.0161

rpa3429 serine acetyltransferase Amino Acid Transport and

Metabolism 0.0140

rpa1415 possible branched-chain amino acid transport system substrate-binding protein

Amino Acid Transport and

Metabolism 0.0136

rpa2166 conserved hypothetical protein Amino Acid Transport and

Metabolism 0.0135

rpa4041 putative branched-chain amino acid ABC transport system ATP-binding protein

Amino Acid Transport and

Metabolism 0.0123

rpa1984 2-dehydro-3-deoxyphosphoheptonate aldolase

Amino Acid Transport and

Metabolism 0.0121

rpa0985 putative branched-chain amino acid

transport system substrate- binding protein Amino Acid Transport and

Metabolism 0.0121

rpa1655 possible urea/short-chain binding protein of ABC transporter

Amino Acid Transport and

Metabolism 0.0120

rpa2967 glutamine synthetase I Amino Acid Transport and

Metabolism 0.0113

rpa4071 carbamoyl-phosphate synthase large subunit

Nucleotide Transport and

Metabolism 0.0285

rpa2200 inosine monophosphate dehydrogenase Nucleotide Transport and

Metabolism 0.0170

rpa3821 phosphoribosylaminoimidazole-succinocar boxamide synthase

Nucleotide Transport and

Metabolism 0.0154

rpa1890 hypothetical protein Nucleotide Transport and

Metabolism 0.0149

rpa1069 possible dihydroorotase Nucleotide Transport and

Metabolism 0.0136

rpa4601 conserved hypothetical protein Nucleotide Transport and

Metabolism 0.0122

rpa1276 carbamoyl-phosphate synthase small subunit

Nucleotide Transport and

Metabolism 0.0116

rpa2047

TrapT family, dctP subunit,

C4-dicarboxylate periplasmic binding protein

Carbohydrate Transport and

Metabolism 0.2409

rpa3470

putative sugar uptake ABC transporter periplasmic solute-binding protein precursor

Carbohydrate Transport and

Metabolism 0.0394

rpa0944 glyceraldehyde-3-phosphate dehydrogenase(GAPDH)

Carbohydrate Transport and

Metabolism 0.0341

rpa1981 ribose 5-phosphate isomerase Carbohydrate Transport and

Metabolism 0.0328

rpa1559 ribulose-bisphosphate carboxylase large chain

Carbohydrate Transport and

Metabolism 0.0290

rpa0851 possible MFS transporter Carbohydrate Transport and

Metabolism 0.0247

rpa0940 fructose-bisphosphate aldolase Carbohydrate Transport and

Metabolism 0.0172

rpa3039 possible polysaccharide deacetylase Carbohydrate Transport and

Metabolism 0.0164

rpa2782

TrapT family, dctP subunit,

C4-dicarboxylate periplasmic binding protein

Carbohydrate Transport and

Metabolism 0.0159

rpa3825 conserved hypothetical protein Carbohydrate Transport and

Metabolism 0.0156

rpa3471 ABC transporter, ATP-binding protein Carbohydrate Transport and

Metabolism 0.0149

rpa4432 NHL repeat Carbohydrate Transport and

Metabolism 0.0146

rpa2049 TrapT family, dctM subunit, C4-dicarboxylate transport

Carbohydrate Transport and

Metabolism 0.0135

rpa0355 putative pts system permease (IIAMan) Carbohydrate Transport and

Metabolism 0.0114

rpa1055 quinolinate synthetase A Coenzyme Metabolism 0.4340 rpa0300 putative dephospho-CoA kinase CoaE Coenzyme Metabolism 0.1000 rpa4370 putative branched-chain amino acid

aminotransferase Coenzyme Metabolism 0.0829

rpa1519 geranylgeranyl pyrophosphate synthase Coenzyme Metabolism 0.0640 rpa2712 delta-aminolevulinic acid dehydratase Coenzyme Metabolism 0.0622

rpa0165 possible nicotinate-nucleotide

adneylyltransferase Coenzyme Metabolism 0.0490

rpa1054 putative L-aspartate oxidase Coenzyme Metabolism 0.0472 rpa0854 5-aminolevulinic acid synthase (ALAS) Coenzyme Metabolism 0.0300 rpa0930 possible 3-octaprenyl-4-hydroxybenzoate

carboxy-lyase Coenzyme Metabolism 0.0290

rpa0875 ferrochelatase Coenzyme Metabolism 0.0288

rpa2671 putative FAD-dependent monoxygenase Coenzyme Metabolism 0.0277 rpa2035 ketol-acid reductoisomerase Coenzyme Metabolism 0.0228 rpa1666 putative coproporphyrinogen oxidase III Coenzyme Metabolism 0.0205 rpa4309 phosphoserine aminotransferase, Coenzyme Metabolism 0.0190 rpa2089 precorrin 2 methylase Coenzyme Metabolism 0.0189 rpa4719 molybdo-pterin binding protein Coenzyme Metabolism 0.0179 rpa1546 Mg-protoporphyrin IX methyl transferase Coenzyme Metabolism 0.0166 rpa1257 possible cobalamin (5`-phosphate)

synthase Coenzyme Metabolism 0.0162

rpa1179 beta-alanine-pyruvate transaminase Coenzyme Metabolism 0.0156 rpa1040 octaprenyl-diphosphate synthase Coenzyme Metabolism 0.0154 rpa1554 5-aminolevulinic acid synthase (ALAS) Coenzyme Metabolism 0.0135 rpa2031 acetolactate synthase (large subunit) Coenzyme Metabolism 0.0132 rpa3391 possible GTP cyclohydrolase I Coenzyme Metabolism 0.0127 rpa2587 lipoic acid synthetase Coenzyme Metabolism 0.0116 rpa4002 putative acyl-CoA dehydrogenase Lipid Metabolism 0.1004 rpa3075 putative malonyl CoA-acyl carrier protein

transacylase Lipid Metabolism 0.0462

rpa3441 enoyl-CoA hydratase/isomerase family

protein Lipid Metabolism 0.0318

rpa3717 enoyl-CoA hydratase Lipid Metabolism 0.0301

rpa4346 putative acetyl-CoA acyltransferase Lipid Metabolism 0.0274

rpa0211 acetyl-CoA synthetase Lipid Metabolism 0.0267

rpa3446 3-hydroxyisobutyrate dehydrogenase Lipid Metabolism 0.0219 rpa4748 3-hydroxybutyryl-CoA dehydrogenase Lipid Metabolism 0.0213 rpa1729 Fatty acid desaturase family Lipid Metabolism 0.0186 rpa2918 undecaprenyl pyrophosphate synthetase Lipid Metabolism 0.0184 rpa4155 3-oxoadipate CoA-transferase subunit B Lipid Metabolism 0.0162 rpa1603 putative fatty acid desaturase Lipid Metabolism 0.0161 rpa3203 propionyl-CoA carboxylase beta chain Lipid Metabolism 0.0159 rpa1094 glutaryl-CoA dehydrogenase Lipid Metabolism 0.0151 rpa2007 possible phosphatidylserine synthase Lipid Metabolism 0.0144 rpa0071 acetyl-CoA carboxylase

carboxyltransferase beta subunit Lipid Metabolism 0.0143

rpa0661 benzoate-CoA ligase Lipid Metabolism 0.0128

rpa0513 putative acetyl-CoA acetyltransferase Lipid Metabolism 0.0125

rpa3289 acyl-CoA dehydrogenase Lipid Metabolism 0.0123

rpa2006 putative phosphatidylserine decarboxylase Lipid Metabolism 0.0118 rpa0818 probable 3-hydroxyacyl-CoA

dehydrogenase Lipid Metabolism 0.0115

rpa0159 ribosomal protein L27 Translation, Ribosomal Structure

and Biogenesis 0.1592

rpa3225 50S ribosomal protein L17 Translation, Ribosomal Structure

and Biogenesis 0.1495

rpa0160 possible acetyltransferases. Translation, Ribosomal Structure

and Biogenesis 0.0910

rpa3270 50S ribosomal protein L10 Translation, Ribosomal Structure

and Biogenesis 0.0869

rpa0433 ribosomal protein S15 Translation, Ribosomal Structure

and Biogenesis 0.0694

rpa3227 30S ribosomal protein S11 Translation, Ribosomal Structure

and Biogenesis 0.0653

rpa3228 30S ribosomal protein S13 Translation, Ribosomal Structure

and Biogenesis 0.0503

rpa0039 50S ribosomal protein L35 Translation, Ribosomal Structure

and Biogenesis 0.0458

rpa1589 30S ribosomal protein S4 Translation, Ribosomal Structure

and Biogenesis 0.0418

rpa3252 elongation factor Tu Translation, Ribosomal Structure

and Biogenesis 0.0397

rpa0051 putative sigma-54 modulation protein Translation, Ribosomal Structure

and Biogenesis 0.0381

rpa0040 translation initiation factor IF-3 Translation, Ribosomal Structure

and Biogenesis 0.0354

rpa0038 ribosomal protein L20 Translation, Ribosomal Structure

and Biogenesis 0.0334

rpa0493 50S ribosomal protein L28 Translation, Ribosomal Structure

and Biogenesis 0.0319

rpa3269 50S ribosomal protein L7/L12 Translation, Ribosomal Structure

and Biogenesis 0.0277

rpa0526 50S ribosomal protein L32 Translation, Ribosomal Structure

and Biogenesis 0.0273

rpa0918 possible 50S ribosomal protein L31 Translation, Ribosomal Structure

and Biogenesis 0.0267

rpa4328 elongation factor G, EF-G Translation, Ribosomal Structure

and Biogenesis 0.0257

rpa0867 Endoribonuclease L-PSP Translation, Ribosomal Structure

and Biogenesis 0.0243

rpa4176 ribosomal protein S21 Translation, Ribosomal Structure

and Biogenesis 0.0242

rpa3255 30S ribosomal protein S12 Translation, Ribosomal Structure

and Biogenesis 0.0235

rpa4197 50S ribosomal protein L36 Translation, Ribosomal Structure

and Biogenesis 0.0221

rpa3129 50S ribosomal protein L33 Translation, Ribosomal Structure

and Biogenesis 0.0178

rpa0158 putative ribosomal protein L21 Translation, Ribosomal Structure

and Biogenesis 0.0177

rpa2768 ribosomal protein S9 Translation, Ribosomal Structure

and Biogenesis 0.0175

rpa2922 30S ribosomal protein S2 Translation, Ribosomal Structure

and Biogenesis 0.0157

rpa4356 putative 50S ribosomal protein L25 Translation, Ribosomal Structure

and Biogenesis 0.0154

rpa3111 Glu-tRNA(Gln) amidotransferase subunit C

Translation, Ribosomal Structure

and Biogenesis 0.0152

rpa4836 30S ribosomal protein S20 Translation, Ribosomal Structure

and Biogenesis 0.0151

rpa2651 Regulator of chromosome condensation, RCC1:Endoribonuclease L-PSP

Translation, Ribosomal Structure

and Biogenesis 0.0149

rpa3137 Endoribonuclease L-PSP Translation, Ribosomal Structure

and Biogenesis 0.0134

rpa0621

putative

N-formylmethionylaminoacyl-tRNA deformylase

Translation, Ribosomal Structure

and Biogenesis 0.0134

rpa3233 ribosomal protein S5 Translation, Ribosomal Structure

and Biogenesis 0.0132

rpa3272 50S ribosomal protein L1 Translation, Ribosomal Structure

and Biogenesis 0.0127

rpa0241 50s ribosomal protein L19 Translation, Ribosomal Structure

and Biogenesis 0.0126

rpa2777 methionyl-tRNA synthetase Translation, Ribosomal Structure

and Biogenesis 0.0115

rpa3672 cold shock protein Transcription 0.1721

rpa3399 cold shock protein Transcription 0.0622

rpa1173 possible cold shock protein Transcription 0.0567 rpa2490 conserved hypothetical protein Transcription 0.0514 rpa4225 putative RNA polymerase sigma factor Transcription 0.0433 rpa0488 possible CarD-like transcriptional regulator Transcription 0.0331 rpa4072 transcriptional elongation factor greA Transcription 0.0330 rpa2692 RNA polymerase omega subunit Transcription 0.0276

rpa0913 DUF179 Transcription 0.0256

rpa2715 possible transcriptional regulator, MarR

family Transcription 0.0250

rpa3226 DNA-directed RNA polymerase alpha

subunit Transcription 0.0248

rpa0367 stress response sigma factor (sigma37,

sigma32 family) Transcription 0.0247

rpa4792 putative RNA polymerase sigma-E factor Transcription 0.0204 rpa3718 putative transcriptional regulator Transcription 0.0197 rpa2140 Transcriptional Regulator, AraC family Transcription 0.0179

rpa3021 transcriptional regulator Transcription 0.0167

rpa0443 possible transcriptional regulator Transcription 0.0154 rpa0866 putative nucleoside diphosphate kinase

regulator Transcription 0.0153

rpa2743 bacterial regulatory protein, MerR family Transcription 0.0150 rpa0207 unknown protein DNA Replication, Recombination

and Repair 0.0861

rpa4277 conserved hypothetical protein DNA Replication, Recombination

and Repair 0.0663

rpa2953 possible DNA-binding protein hu-alpha (NS2) (HU-2)

DNA Replication, Recombination

and Repair 0.0534

rpa3851 recombination protein recA DNA Replication, Recombination

and Repair 0.0256

rpa2742 integration host factor alpha subunit DNA Replication, Recombination

and Repair 0.0252

rpa0782 conserved unknown protein DNA Replication, Recombination

and Repair 0.0147

rpa0066 integration host factor beta chain DNA Replication, Recombination

and Repair 0.0139

rpa2814 single-strand DNA-binding protein DNA Replication, Recombination

and Repair 0.0123

prpa5 resolvase DNA Replication, Recombination

and Repair 0.0117

rpa3020 RND multidrug efflux membrane fusion protein MexE precursor

Cell Envelope Biogenesis, Outer

Membrane 0.1457

rpa0857 possible outer membrane protein Cell Envelope Biogenesis, Outer

Membrane 0.0884

rpa3371 putative outer membrane protein Cell Envelope Biogenesis, Outer

Membrane 0.0472

rpa0169 putative periplasmic carboxyl-terminal processing protease

Cell Envelope Biogenesis, Outer

Membrane 0.0449

rpa2686 dihydrodipicolinate synthase Cell Envelope Biogenesis, Outer

Membrane 0.0411

rpa1123 omp16 protein Cell Envelope Biogenesis, Outer

Membrane 0.0244

rpa0222 Beta-Ig-H3/Fasciclin domain Cell Envelope Biogenesis, Outer

Membrane 0.0242

rpa2772 rare lipoprotein A Cell Envelope Biogenesis, Outer

Membrane 0.0205

rpa1917 LipA a lipoprotein Cell Envelope Biogenesis, Outer

Membrane 0.0193

rpa1172 possible outer membrane protein Cell Envelope Biogenesis, Outer

Membrane 0.0171

rpa2837 Peptidoglycan-binding LysM:Peptidase M23/M37

Cell Envelope Biogenesis, Outer

Membrane 0.0151

rpa3536 putative penicillin-binding protein Cell Envelope Biogenesis, Outer

Membrane 0.0148

rpa4502 putative outer membrane protein Cell Envelope Biogenesis, Outer

Membrane 0.0142

rpa4271 penicillin tolerance protein (lytB) , control of stringent response

Cell Envelope Biogenesis, Outer

Membrane 0.0138

rpa1879 Choloylglycine hydrolase Cell Envelope Biogenesis, Outer

Membrane 0.0126

rpa4678 possible outer membrane protein OprF (AF117972)

Cell Envelope Biogenesis, Outer

Membrane 0.0125

rpa1807 possible heavy metal efflux pump, HlyD family secretion protein

Cell Envelope Biogenesis, Outer

Membrane 0.0118

rpa0805 possible outer membrane protein Cell Envelope Biogenesis, Outer

Membrane 0.0118

rpa3929 conserved unknown protein Cell Motility and Secretion 0.0587 rpa2033 possible AtsE Cell Motility and Secretion 0.0167 rpa0889 small heat shock protein Posttranslational Modification,

Protein Turnover, Chaperones 0.2799 rpa0453 possible NifU-like domain (residues

119-187)

Posttranslational Modification,

Protein Turnover, Chaperones 0.1097 rpa2895 possible small heat shock protein Posttranslational Modification,

Protein Turnover, Chaperones 0.1041 rpa2959 ATP-dependent protease Lon Posttranslational Modification,

Protein Turnover, Chaperones 0.1007 rpa1929 htrA-like serine protease Posttranslational Modification,

Protein Turnover, Chaperones 0.0978 rpa0787 putative heat shock protein (htpX) Posttranslational Modification,

Protein Turnover, Chaperones 0.0965 rpa0333 heat shock protein DnaK (70) Posttranslational Modification,

Protein Turnover, Chaperones 0.0909 rpa0054 putative small heat shock protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0769 rpa1126 metalloprotease (cell division protein)

FtsH

Posttranslational Modification,

Protein Turnover, Chaperones 0.0755 rpa2960 ATP-dependent Clp protease ATP binding

subunit ClpX

Posttranslational Modification,

Protein Turnover, Chaperones 0.0738 rpa3812 putative holocytochrome c synthase Posttranslational Modification,

Protein Turnover, Chaperones 0.0459 rpa2165 chaperonin GroES2, cpn10 Posttranslational Modification,

Protein Turnover, Chaperones 0.0445 rpa3491 putative protease subunit hflK Posttranslational Modification,

Protein Turnover, Chaperones 0.0436 rpa2443 probable antioxidant protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0404

rpa4579 possible serine protease, htrA-like Posttranslational Modification,

Protein Turnover, Chaperones 0.0397 rpa3147 endopeptidase Clp: ATP-binding chain A Posttranslational Modification,

Protein Turnover, Chaperones 0.0326 rpa4268 peroxiredoxin-like protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0318 rpa0019 cytochrome-c oxidase fixN chain, heme

and copper binding subunit

Posttranslational Modification,

Protein Turnover, Chaperones 0.0297 rpa0966 putative membrane-bound hydrogenase

component hupE

Posttranslational Modification,

Protein Turnover, Chaperones 0.0293 rpa0017 cytochrome oxidase subunit, small

membrane protein

Posttranslational Modification,

Protein Turnover, Chaperones 0.0265 rpa4487 DSBA oxidoreductase:Tat pathway signal Posttranslational Modification,

Protein Turnover, Chaperones 0.0241 rpa1140 chaperonin GroEL1, cpn60 Posttranslational Modification,

Protein Turnover, Chaperones 0.0227 rpa0331 possible heat shock protein (HSP-70

COFACTOR), grpE

Posttranslational Modification,

Protein Turnover, Chaperones 0.0224 rpa1606 conserved unknown protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0220 rpa0373 thioredoxin Posttranslational Modification,

Protein Turnover, Chaperones 0.0198 rpa3159 probable glutathione S-transferase Posttranslational Modification,

Protein Turnover, Chaperones 0.0188 rpa2461 Protein of unknown function UPF0075 Posttranslational Modification,

Protein Turnover, Chaperones 0.0183 rpa1320 conserved hypothetical protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0183

rpa4069 DUF25 Posttranslational Modification,

Protein Turnover, Chaperones 0.0176 rpa1576 putative glutathione S-transferase Posttranslational Modification,

Protein Turnover, Chaperones 0.0172

rpa3799 DUF182 Posttranslational Modification,

Protein Turnover, Chaperones 0.0170 rpa3490 putative hflC protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0162 rpa4194 osmotically inducible protein OsmC Posttranslational Modification,

Protein Turnover, Chaperones 0.0154 rpa0073 thioredoxin Posttranslational Modification,

Protein Turnover, Chaperones 0.0154 rpa0452 Glycoprotease (M22) metalloprotease Posttranslational Modification,

Protein Turnover, Chaperones 0.0143 rpa0598 putative glutaredoxin Posttranslational Modification,

Protein Turnover, Chaperones 0.0140 rpa3488 probable serine protease Posttranslational Modification,

Protein Turnover, Chaperones 0.0138 rpa2720 possible glutathione-S-transferase Posttranslational Modification,

Protein Turnover, Chaperones 0.0135 rpa2164 chaperonin GroEL2, cpn60 Posttranslational Modification,

Protein Turnover, Chaperones 0.0130 rpa2442 putative outer membrane protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0121 rpa4075 thioredoxin reductase Posttranslational Modification,

Protein Turnover, Chaperones 0.0121 rpa1022 possible outer membrane protein Posttranslational Modification,

Protein Turnover, Chaperones 0.0120

rpa3627 putative glutathione peroxidase Posttranslational Modification,

Protein Turnover, Chaperones 0.0117 rpa3937 putative transcriptional regulator Posttranslational Modification,

Protein Turnover, Chaperones 0.0117 rpa0429 catalase/peroxidase Inorganic Ion Transport and

Metabolism 0.0753

rpa1693 superoxide dismutase Inorganic Ion Transport and

Metabolism 0.0431

rpa3600 bacterioferritin Inorganic Ion Transport and

Metabolism 0.0347

rpa0225 putative superoxide dismutase (Cu/Zn) Inorganic Ion Transport and

Metabolism 0.0322

rpa1522 bacteriochlorophyllide reductase subunit BchX

Inorganic Ion Transport and

Metabolism 0.0310

rpa3002 potassium-transporting atpase c chain, KdpC

Inorganic Ion Transport and

Metabolism 0.0301

rpa2269 conserved unknown protein Inorganic Ion Transport and

Metabolism 0.0277

rpa0450 ferric uptake regulation protein Inorganic Ion Transport and

Metabolism 0.0252

rpa4757 possible outer membrane receptor for iron transport

Inorganic Ion Transport and

Metabolism 0.0193

rpa0424 iron response regulator protein Inorganic Ion Transport and

Metabolism 0.0171

rpa2043 putative ABC transporter, periplasmic substrate-binding protein

Inorganic Ion Transport and

Metabolism 0.0152

rpa4636 FeoA family Inorganic Ion Transport and

Metabolism 0.0152

rpa4717 putative molybdate transport system substrate-binding protein

Inorganic Ion Transport and

Metabolism 0.0149

rpa4620 nitrogenase iron protein, nifH Inorganic Ion Transport and

Metabolism 0.0132

rpa2121 conserved unknown protein Inorganic Ion Transport and

Metabolism 0.0123

rpa1274 possible Dps protein family

starvation-inducible DNA-binding protein

Inorganic Ion Transport and

Metabolism 0.0122

rpa0013 putative cation (heavy metal) transporting ATPase

Inorganic Ion Transport and

Metabolism 0.0114

rpa1975 possible Trap-T transport system, dctP subunit

Secondary metabolites biosynthesis, transport and catabolism

0.1042 rpa4443 acyl-CoA synthetase

Secondary metabolites biosynthesis, transport and catabolism

0.0526 rpa4267 long-chain-fatty-acid-CoA-ligase

Secondary metabolites biosynthesis, transport and catabolism

0.0276 rpa3299 putative long-chain-fatty-acid CoA ligase

Secondary metabolites biosynthesis, transport and catabolism

0.0259 rpa1763 putative long-chain-fatty-acid CoA ligase

Secondary metabolites biosynthesis, transport and catabolism

0.0255 rpa1207 putative transcriptional regulator

Secondary metabolites biosynthesis, transport and catabolism

0.0243

ドキュメント内 The objective of this study is to clarify the relationship between survivability and energy supply by light in the purple photosynthetic bacteria under non-growing conditions (ページ 104-148)